View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4709-Insertion-2 (Length: 780)
Name: NF4709-Insertion-2
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709-Insertion-2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 321 - 780
Target Start/End: Complemental strand, 45622394 - 45621935
Alignment:
| Q |
321 |
cctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaa |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45622394 |
cctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaa |
45622295 |
T |
|
| Q |
421 |
ttccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgcaagcactgaagttggtgtttgtaatttacctgttgcacat |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
45622294 |
ttccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctacaagcaccgaagttggtgtttgtattttacctgttgcacat |
45622195 |
T |
|
| Q |
521 |
taccctagaaaaagaatgtgatgcgatgtccttggttccctatctcactatctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaa |
620 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45622194 |
taccctagaaaaagaatgcgacccgatgtccctggttccctatctcactatctaggccacgcctcccctacaataatgaaggcaaaaattgaagaacaaa |
45622095 |
T |
|
| Q |
621 |
tttttgttgagaacataataggaaagaaatgaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaa |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
45622094 |
tttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaattcgctaaagagttgtttattgcactgaaactgaaa |
45621995 |
T |
|
| Q |
721 |
tcaaaagaaaaatgcatgcaccatggaacattcaggaaatcgctattggtgggttgtttc |
780 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45621994 |
tcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgtttc |
45621935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 45622708 - 45622441
Alignment:
| Q |
7 |
accataaagtaaaaatacgatccaaaatttcttatgaacaggaccacataactataagggataatttttatttcattaatccttccggaagaaaaaacag |
106 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45622708 |
accataaagtaaaaacacaatccaaaatttcttatgaataggaccacataactataagggacaatttttatttcattaatcctgccggaagaaaaaacag |
45622609 |
T |
|
| Q |
107 |
aaaaacattaccaattttactctccataatgaatagctgcaaaatccaatatgagaataaacaggcaatgacgacatggaccccttggtcagtttgg-ca |
205 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||| |||| ||||| || |
|
|
| T |
45622608 |
aaaaacattaacaattttattctccataatgaatagctgcaaaatccagtatgagaatagacgggcaatgacgaca-ggacccctttgtcaatttggcca |
45622510 |
T |
|
| Q |
206 |
ctccatggtttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45622509 |
ctccatggtttatgtgaaatacttttcatggccacattttttaaaccccaatttcgtacccatgcatct |
45622441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 321 - 780
Target Start/End: Complemental strand, 22603914 - 22603456
Alignment:
| Q |
321 |
cctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaa |
420 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22603914 |
cctgttatgagcactaattgtttaaggaaccattcattgtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggga |
22603815 |
T |
|
| Q |
421 |
ttccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgcaagcactgaagttggtgtttgtaatttacctgttgcacat |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22603814 |
ttccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgcaagcactgaagttggtgtttgtattttacctgttgcacat |
22603715 |
T |
|
| Q |
521 |
taccctagaaaaagaatgtgatgcgatgtccttggttccctatctcactatctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaa |
620 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
22603714 |
taccctagaaaaagaatgtgacacgatgtccctggttccctatctcactatctaggccacgcctcccctacaataatgaaggc-aaaattgaagaacaaa |
22603616 |
T |
|
| Q |
621 |
tttttgttgagaacataataggaaagaaatgaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaa |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22603615 |
tttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaa |
22603516 |
T |
|
| Q |
721 |
tcaaaagaaaaatgcatgcaccatggaacattcaggaaatcgctattggtgggttgtttc |
780 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
22603515 |
tcaaaagaaaaatgcatgcaccatggaacactcaggaaaccgctattggtgggttgtttc |
22603456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 22604229 - 22603961
Alignment:
| Q |
7 |
accataaagtaaaaatacgatccaaaatttcttatgaacaggaccacataactataagggataatttttatttcattaatccttccggaagaaaaaacag |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
22604229 |
accataaagtaaaaacacgatccaaaatttcttatgaataggaccacataactataagggacaatttttatttcattaatcctgccagaagaaaaaacag |
22604130 |
T |
|
| Q |
107 |
aaaaacattaccaattttactctccataatgaatagctgcaaaatccaatatgagaataaacaggcaatgacgacatggaccccttggtcagtttgg-ca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
22604129 |
aaaaacattaccaattttactctccataatgaatagctgcaaaatccagtatgagaatagacgggcaatgacgacatggaccccttggtcagtttggcca |
22604030 |
T |
|
| Q |
206 |
ctccatggtttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22604029 |
ctccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatct |
22603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 359 - 780
Target Start/End: Original strand, 15214028 - 15214442
Alignment:
| Q |
359 |
gtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
458 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214028 |
gtggaagacaaaagtcaacaacatcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
15214127 |
T |
|
| Q |
459 |
cgtacataaaaacccgacctgcaagcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggttc |
558 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
15214128 |
cgttcataaaaacccgacctgctagcactgaagttg-------tattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttc |
15214220 |
T |
|
| Q |
559 |
cctatctcactatctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggaca |
658 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15214221 |
cctatctcactatccaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggata |
15214320 |
T |
|
| Q |
659 |
taatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
758 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214321 |
taatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
15214420 |
T |
|
| Q |
759 |
atcgctattggtgggttgtttc |
780 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
15214421 |
atcgctattggtgggttatttc |
15214442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 359 - 780
Target Start/End: Original strand, 15253247 - 15253661
Alignment:
| Q |
359 |
gtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
458 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253247 |
gtggaagacaaaagtcaacaacatcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
15253346 |
T |
|
| Q |
459 |
cgtacataaaaacccgacctgcaagcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggttc |
558 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
15253347 |
cgttcataaaaacccgacctgctagcactgaagttg-------tattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttc |
15253439 |
T |
|
| Q |
559 |
cctatctcactatctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggaca |
658 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15253440 |
cctatctcactatccaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggata |
15253539 |
T |
|
| Q |
659 |
taatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
758 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253540 |
taatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
15253639 |
T |
|
| Q |
759 |
atcgctattggtgggttgtttc |
780 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
15253640 |
atcgctattggtgggttatttc |
15253661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 15213688 - 15213955
Alignment:
| Q |
7 |
accataaagtaaaaatacgatccaaaatttcttatgaacaggaccacataactataagggataatttttatttcattaatccttccggaagaaaaaacag |
106 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
15213688 |
accataaagtcaaaacacgatccaaaatttcttatgaataagaccacataactataagggacaatttttatttcattaatcctgccggcagaaaaaacag |
15213787 |
T |
|
| Q |
107 |
aaaaacattaccaattttactctccataatgaatagctgcaaaatccaatatgagaataaacaggcaatgacgacatggaccccttggtcagtttggcac |
206 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
15213788 |
aaaaacattactaattttactctccttaatgaatagctgcaaaatccagtatgagaatagacgggaaatgaggacatggaccccttggtcaatttgacac |
15213887 |
T |
|
| Q |
207 |
tccatggtttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15213888 |
tccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatct |
15213955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 15252907 - 15253174
Alignment:
| Q |
7 |
accataaagtaaaaatacgatccaaaatttcttatgaacaggaccacataactataagggataatttttatttcattaatccttccggaagaaaaaacag |
106 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
15252907 |
accataaagtcaaaacacgatccaaaatttcttatgaataagaccacataactataagggacaatttttatttcattaatcctgccggcagaaaaaacag |
15253006 |
T |
|
| Q |
107 |
aaaaacattaccaattttactctccataatgaatagctgcaaaatccaatatgagaataaacaggcaatgacgacatggaccccttggtcagtttggcac |
206 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
15253007 |
aaaaacattactaattttactctccttaatgaatagctgcaaaatccagtatgagaatagacgggaaatgaggacatggaccccttggtcaatttgacac |
15253106 |
T |
|
| Q |
207 |
tccatggtttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253107 |
tccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatct |
15253174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 359 - 780
Target Start/End: Complemental strand, 20188677 - 20188263
Alignment:
| Q |
359 |
gtggaagacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
458 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188677 |
gtggaaaacaaaagtcaacaacatcatttaattgatcaaaagaaacaacatttctctaggaatttcaatcatcggtcaccaaatcctttctgaagtgtgt |
20188578 |
T |
|
| Q |
459 |
cgtacataaaaacccgacctgcaagcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggttc |
558 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
20188577 |
cgtacataaaaacccgatctgcaagcactgaagttg-------tattttacctgttgcacattaccctagaaaaagaatgcagcgcgatgtccctggttc |
20188485 |
T |
|
| Q |
559 |
cctatctcactatctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggaca |
658 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20188484 |
cctatctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggata |
20188385 |
T |
|
| Q |
659 |
taatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
758 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188384 |
taatagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaa |
20188285 |
T |
|
| Q |
759 |
atcgctattggtgggttgtttc |
780 |
Q |
| |
|
| ||||||||||||| |||||| |
|
|
| T |
20188284 |
accgctattggtggggtgtttc |
20188263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 571 - 742
Target Start/End: Complemental strand, 51091788 - 51091612
Alignment:
| Q |
571 |
tctaggccacgcctcccctacaataatgaaaacaaaaattgaagaacaaatttttgttgagaac-ataataggaaagaaatgaaggacataatagaatca |
669 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||| ||||| |||||||| ||| | ||||| || ||||||||||||||||| |||| ||||||||| || |
|
|
| T |
51091788 |
tctaggtcactcctcccccacaataatgaaggcaaaatttgaagaaaaaaaaatggttgataaatataataggaaagaaatgtaggatataatagaaaca |
51091689 |
T |
|
| Q |
670 |
atggataaatataaaatcactaaagaattgtttattgcactgaaactga----aatcaaaagaaaaatgcatgcacc |
742 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
51091688 |
attgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcacc |
51091612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 20188824 - 20188774
Alignment:
| Q |
115 |
taccaattttactctccataatgaatagctgcaaaatccaatatgagaata |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20188824 |
taccaattttactctccataatgaatagctgcaaaatccagtatgagaata |
20188774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 114 - 274
Target Start/End: Original strand, 22840073 - 22840233
Alignment:
| Q |
114 |
ttaccaattttactctccataatgaatagctgcaaaatccaatatgagaataaacaggcaatgacgacatggaccccttggtcagtttggcactccatgg |
213 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| | |||||||||| || ||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
22840073 |
ttaccaattttactctacataatgtatagctgcaaaatttagtatgagaatagaccggcaatgacgacatggatcacttggtcactttggcactccatgg |
22840172 |
T |
|
| Q |
214 |
tttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
||| | | |||||||||||||||| |||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
22840173 |
tttgtctcaaatacttttcatggccacatttttagaacccgaatttcgtagccctgcatct |
22840233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 24630601 - 24630537
Alignment:
| Q |
367 |
caaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatc |
431 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24630601 |
caaaagtcagaaccaacattgaattgctcaaaagaaacaacatttatctaggaattccaatcatc |
24630537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 600
Target Start/End: Original strand, 22845740 - 22845848
Alignment:
| Q |
491 |
gttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggttccctatctcactatctaggccacgcctccccta |
590 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||| |||| ||| | || |||||| | ||||||||||||||| |||||| ||| ||||||| | |
|
|
| T |
22845740 |
gttggtgtttgtattttacttgttgcaccttaccctagtaaaaaaat-cggtgtgatgtctcttgttccctatctcactgtctaggtcactcctccccga |
22845838 |
T |
|
| Q |
591 |
caataatgaa |
600 |
Q |
| |
|
||||||||| |
|
|
| T |
22845839 |
taataatgaa |
22845848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 24630820 - 24630726
Alignment:
| Q |
179 |
gacatggaccccttggtcagtttggcactccatggtttatgtgaaatacttttcatggctacatttttgaaaccccaatttcgtagccatgcatct |
274 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||| ||| |||||| |||||||| |||||||| ||||||| ||| |||||| ||||||| |
|
|
| T |
24630820 |
gacatggaccc-tgggtaagtttagcactccatggtttgtgtctaatactcttcatggccacatttttagaaccccagttttgtagccctgcatct |
24630726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University