View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4709_high_2 (Length: 389)
Name: NF4709_high_2
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 31952025 - 31951719
Alignment:
| Q |
18 |
gtttcaaccttcaaattggtaaatgtataaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaact |
117 |
Q |
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| T |
31952025 |
gtttcaaccttcaaattggtaaatgtataaaacagttcacaaatatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaaat |
31951926 |
T |
|
| Q |
118 |
ctaaagatcctgttaaatgtgtaaaataattagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgt |
217 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951925 |
ctaa-gatcctgttaaatgtgtaaaataaatagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgt |
31951827 |
T |
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| Q |
218 |
cgttagaatttaggtcacctttggaatatatgttcataatctatatattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaat |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951826 |
cgttagaatttaggtcacctttgaaatatatgttcataatctatatgttctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaat |
31951727 |
T |
|
| Q |
318 |
ttattgat |
325 |
Q |
| |
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|||||||| |
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| T |
31951726 |
ttattgat |
31951719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 45 - 325
Target Start/End: Complemental strand, 55320899 - 55320620
Alignment:
| Q |
45 |
taaaacagtccacaaaaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaat |
144 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
55320899 |
taaaacagtccacaaaaatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaa-gatcctgttaaatgtgtaaaat |
55320801 |
T |
|
| Q |
145 |
aattagtccacaaaattgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaat |
244 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
55320800 |
aaatagtccacaaaattgtcactttagtttgattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaat |
55320701 |
T |
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| Q |
245 |
atatgttcataatctatatattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat |
325 |
Q |
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| T |
55320700 |
atatgttcataatctatatgttctttgtatggattggcctctaatttattttacaagtgtcatgaaattaaatttattgat |
55320620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 31951276 - 31951214
Alignment:
| Q |
322 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct |
384 |
Q |
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| T |
31951276 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct |
31951214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 55320138 - 55320076
Alignment:
| Q |
322 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct |
384 |
Q |
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|
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| T |
55320138 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct |
55320076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 31606986 - 31607022
Alignment:
| Q |
283 |
ctctaatttattttacaagtgtcgtgaaattaaattt |
319 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
31606986 |
ctctaatttattttacaagtgtcatgaaattaaattt |
31607022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 2778272 - 2778334
Alignment:
| Q |
322 |
tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
2778272 |
tgatcttaagttagtggactaaagtgctcaatataatggattagtatttcacctgcctttgct |
2778334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 12632157 - 12632120
Alignment:
| Q |
283 |
ctctaatttattttacaagtgtcgtgaaattaaattta |
320 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
12632157 |
ctctaatttattttacaagtgtcatgaaattaaattta |
12632120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 45290944 - 45290907
Alignment:
| Q |
283 |
ctctaatttattttacaagtgtcgtgaaattaaattta |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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| T |
45290944 |
ctctaatttattttacaagtgtcatgaaattaaattta |
45290907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 19055545 - 19055585
Alignment:
| Q |
330 |
agttaggggactaaagtgctcaatataatggattaatattt |
370 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||| |
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| T |
19055545 |
agttagtgggctaaagtgcccaatataatggattaatattt |
19055585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 50807887 - 50807847
Alignment:
| Q |
330 |
agttaggggactaaagtgctcaatataatggattaatattt |
370 |
Q |
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|
|||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
50807887 |
agttagtggaataaagtgcccaatataatggattaatattt |
50807847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 50867991 - 50868031
Alignment:
| Q |
330 |
agttaggggactaaagtgctcaatataatggattaatattt |
370 |
Q |
| |
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|||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
50867991 |
agttagtggaataaagtgcccaatataatggattaatattt |
50868031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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