View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4709_high_7 (Length: 258)
Name: NF4709_high_7
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 19175262 - 19175509
Alignment:
| Q |
11 |
cacagacataggacacaacattgacaccgacacatgacataaataataatttattgtaattatatgtgttgttataggacactaaacaatctttcaatac |
110 |
Q |
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| T |
19175262 |
cacagacataggacacaacattgacactgacacatgacacaaataataatttattgtaattatatgcgttgttgtaggacactaaacaatctttcaatac |
19175361 |
T |
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| Q |
111 |
gaagtgtctctactaaacacagatacaaaggacaaagtatattaattggtctaaaaaagcaataaaatattttgagaatataaacttttaaaccataaaa |
210 |
Q |
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| T |
19175362 |
gaagtgtctctactacatacacatacaaaggatatagtatattaattggtctaaaaaagcaataaaatattttgagaatataaactttttaaccataaaa |
19175461 |
T |
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| Q |
211 |
ttctttcaacactactgcatagagtttagagactggtctcatggtctc |
258 |
Q |
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| T |
19175462 |
ttctttcaacactactccatagagtttagagactggtctcatggtctc |
19175509 |
T |
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