View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4709_low_3 (Length: 340)
Name: NF4709_low_3
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 10418742 - 10419056
Alignment:
| Q |
18 |
gtttttactatatctcttt-gtttttgtcccaaaataacatcattactctaactctagggctaatgacaagaagtcagcgaggaatgggttgaaattaat |
116 |
Q |
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| T |
10418742 |
gtttttaccatatctcttttgtttttgtcccaaaataacatcattactctaactctagggataatgacaagaagtcagcgaggaatgggttgaaattaat |
10418841 |
T |
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| Q |
117 |
tagtgccgaatgagtcggcatataaggatcccaggaggggttgactttcttgcgatgccaattaatacaccaaatattaacacaaaagtcagaatgcctt |
216 |
Q |
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| T |
10418842 |
tagtgccggaggaatcggcatataaggatcccaggaggggttgactttcatgcgatgccaattaatacaccaaatattaacacaaaagtcagaatgcctt |
10418941 |
T |
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| Q |
217 |
ttaattttgttttaatgcataagtctataaattcaacgctannnnnnnnagcttgcgaaacattacacgtgattttttattgttgcaaaagaatacgtac |
316 |
Q |
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| T |
10418942 |
ttaattttgttttaatgtat-agtctataaattcaacgctattttttttagcttgcgaaacattacacgtgattttttattgttgcaaaagaatacgtac |
10419040 |
T |
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| Q |
317 |
acatgataagtattat |
332 |
Q |
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|||||||||||||||| |
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| T |
10419041 |
acatgataagtattat |
10419056 |
T |
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