View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4709_low_4 (Length: 319)
Name: NF4709_low_4
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2600641 - 2600947
Alignment:
| Q |
1 |
ccattcctacctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaaggactacagaatccacacgcagagacctttggagacggtggt |
100 |
Q |
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| T |
2600641 |
ccatacctacctcgaccgacgtttaccgggctttgatcgttgaccctttttcccaaaaggactacagaatccacacgcggagacctttggagacggtggt |
2600740 |
T |
|
| Q |
101 |
tcgatcgctggtgaaacttttccggtacggtatcctcgtccagcaccggtggagcggcttctttgtacggtggttttcacatgaagctctttggaattat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2600741 |
tcgatcgctggtgaaacttttccggtacggtatcctcttccagcaccggtggaatggcttctttgtacggtggttttcacacgaagctctttggaattat |
2600840 |
T |
|
| Q |
201 |
tagtagtattatcttcttcttcttgcttgagtttgtttaattctcctgataagaatctatcatcccaaacaagaccagatgaacctgatcttctgaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600841 |
tagtagtattatcttcttcttcttgcttgagtttgtttaattctcctgataagaatctgtcatcccaaacaagaccagatgaacctgatcttctgaatga |
2600940 |
T |
|
| Q |
301 |
tacttca |
307 |
Q |
| |
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||||||| |
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| T |
2600941 |
tacttca |
2600947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 44510605 - 44510489
Alignment:
| Q |
49 |
tttcccaaaaggactacagaatccacacgcagagacctttggagacggtggttcgatcgctggtgaaacttttccggtacggtatcctcgtccagcaccg |
148 |
Q |
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||||||||||| || ||| || ||||| ||||| | | | ||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||| |
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| T |
44510605 |
tttcccaaaagcaccacaaaacccacaagcagaaatcctaggagacggtggctcaatcgccggagaaacttttccggtacggtaaccacgtcctccaccg |
44510506 |
T |
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| Q |
149 |
gtggagcggcttctttg |
165 |
Q |
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|||| || |||||||| |
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| T |
44510505 |
ttggaacgacttctttg |
44510489 |
T |
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