View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4709_low_6 (Length: 275)
Name: NF4709_low_6
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4709_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 20817657 - 20817904
Alignment:
| Q |
16 |
caattatttctctttcatgtactgtatctcaatttatagaacagcatttaatttaataatttcaatcatattaatagcatcaattttataggttgatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817657 |
caattatttctctttcatgtactgtatctcaatttatagaacagcatttaatttaataatttcaatcatattaatagcatcaattttataggttgatttt |
20817756 |
T |
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| Q |
116 |
tctttcacaattgcttgatactcggatatccagaatgtcgaaaattgaatgcattttgctatttattgaaatttacaatcgtttcttaaaccttcttcag |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20817757 |
tctttcacaattgcttgatactcggatatccagtatgacgaaaattgaatgcattttgctatttattgaaatttacaatcgtttcttaaaccttctgcag |
20817856 |
T |
|
| Q |
216 |
aatcttcatgataagtagcattattgacgtgctcctcataccagtgtc |
263 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
20817857 |
aatcttcatgataagtagcatcatcgacgtgctcctcataccagtgtc |
20817904 |
T |
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