View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4709_low_9 (Length: 240)

Name: NF4709_low_9
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4709_low_9
NF4709_low_9
[»] chr4 (12 HSPs)
chr4 (1-231)||(4697534-4697765)
chr4 (4-226)||(8140832-8141054)
chr4 (1-125)||(9409121-9409246)
chr4 (1-126)||(16675167-16675290)
chr4 (46-115)||(16928540-16928609)
chr4 (56-126)||(26654043-26654114)
chr4 (1-113)||(12568196-12568307)
chr4 (1-108)||(11361725-11361833)
chr4 (56-108)||(16647169-16647221)
chr4 (39-82)||(18558369-18558412)
chr4 (1-80)||(12809946-12810026)
chr4 (1-107)||(24924935-24925039)
[»] chr2 (17 HSPs)
chr2 (1-220)||(31403904-31404124)
chr2 (1-195)||(29891148-29891343)
chr2 (7-206)||(24543956-24544156)
chr2 (1-118)||(26650970-26651088)
chr2 (1-126)||(17402853-17402979)
chr2 (1-124)||(32890459-32890580)
chr2 (56-124)||(17676681-17676749)
chr2 (1-155)||(25520335-25520490)
chr2 (1-118)||(18929366-18929483)
chr2 (1-126)||(15437954-15438079)
chr2 (70-124)||(17637941-17637995)
chr2 (35-108)||(19878974-19879048)
chr2 (1-82)||(20478252-20478332)
chr2 (56-113)||(21498047-21498104)
chr2 (56-124)||(2482137-2482205)
chr2 (39-79)||(27190007-27190047)
chr2 (39-79)||(27839821-27839861)
[»] chr8 (23 HSPs)
chr8 (1-228)||(27123446-27123672)
chr8 (7-126)||(13110279-13110398)
chr8 (1-206)||(16600633-16600839)
chr8 (1-198)||(18671997-18672195)
chr8 (1-104)||(9286315-9286418)
chr8 (3-226)||(22713460-22713685)
chr8 (7-126)||(25095124-25095244)
chr8 (1-107)||(28371164-28371271)
chr8 (16-125)||(9218221-9218331)
chr8 (1-108)||(23540204-23540312)
chr8 (28-126)||(24577311-24577409)
chr8 (1-124)||(11030721-11030844)
chr8 (7-126)||(25059779-25059899)
chr8 (56-113)||(22454640-22454697)
chr8 (56-123)||(5892712-5892780)
chr8 (140-206)||(13111123-13111190)
chr8 (56-107)||(32352299-32352350)
chr8 (56-107)||(32368960-32369011)
chr8 (76-118)||(23355589-23355631)
chr8 (39-81)||(24093188-24093230)
chr8 (56-124)||(15340832-15340901)
chr8 (56-124)||(15429897-15429966)
chr8 (56-124)||(15521201-15521270)
[»] chr1 (14 HSPs)
chr1 (1-225)||(13201930-13202156)
chr1 (1-156)||(36571594-36571747)
chr1 (1-206)||(17615338-17615544)
chr1 (13-112)||(20146272-20146372)
chr1 (1-126)||(33103095-33103222)
chr1 (41-206)||(20866337-20866503)
chr1 (64-220)||(30382802-30382957)
chr1 (10-121)||(22619996-22620107)
chr1 (3-206)||(11013714-11013920)
chr1 (2-107)||(20150420-20150526)
chr1 (9-102)||(22607823-22607916)
chr1 (40-122)||(13232720-13232803)
chr1 (53-108)||(33379283-33379338)
chr1 (1-81)||(22533685-22533766)
[»] scaffold1102 (1 HSPs)
scaffold1102 (1-156)||(810-963)
[»] chr7 (22 HSPs)
chr7 (1-226)||(10649085-10649311)
chr7 (1-126)||(17600661-17600787)
chr7 (7-116)||(18084370-18084479)
chr7 (1-155)||(4173376-4173531)
chr7 (1-122)||(5531657-5531778)
chr7 (1-222)||(9022360-9022581)
chr7 (2-118)||(2547039-2547156)
chr7 (1-105)||(14987060-14987165)
chr7 (1-105)||(15416671-15416776)
chr7 (16-124)||(18046463-18046571)
chr7 (51-126)||(41132044-41132119)
chr7 (1-108)||(20145942-20146050)
chr7 (29-122)||(3743542-3743637)
chr7 (1-108)||(24832499-24832606)
chr7 (13-216)||(25620933-25621133)
chr7 (56-113)||(7524673-7524730)
chr7 (2-126)||(4978745-4978869)
chr7 (1-81)||(10309985-10310066)
chr7 (56-108)||(12469044-12469096)
chr7 (144-205)||(4240174-4240235)
chr7 (1-81)||(12331026-12331106)
chr7 (39-79)||(20923401-20923441)
[»] chr6 (18 HSPs)
chr6 (1-206)||(14762802-14763010)
chr6 (1-128)||(16142911-16143038)
chr6 (17-227)||(17296075-17296278)
chr6 (28-124)||(16142635-16142730)
chr6 (1-216)||(16143217-16143431)
chr6 (1-126)||(17524919-17525045)
chr6 (64-228)||(27763763-27763927)
chr6 (1-108)||(16177343-16177451)
chr6 (9-117)||(17947827-17947935)
chr6 (1-156)||(18713789-18713948)
chr6 (1-228)||(19723691-19723915)
chr6 (46-108)||(16793390-16793452)
chr6 (1-102)||(22397545-22397648)
chr6 (1-113)||(241965-242075)
chr6 (3-108)||(1177199-1177304)
chr6 (13-108)||(15830073-15830169)
chr6 (13-108)||(31126133-31126229)
chr6 (56-103)||(17352818-17352865)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-205)||(374012-374204)
[»] chr5 (20 HSPs)
chr5 (1-206)||(19923842-19924048)
chr5 (1-206)||(19926569-19926775)
chr5 (1-125)||(17167229-17167353)
chr5 (8-155)||(24878443-24878590)
chr5 (46-220)||(25667092-25667266)
chr5 (52-124)||(16375179-16375251)
chr5 (1-108)||(23379358-23379466)
chr5 (1-107)||(19217967-19218073)
chr5 (1-128)||(31532945-31533073)
chr5 (9-108)||(20064448-20064548)
chr5 (1-108)||(20713267-20713375)
chr5 (13-108)||(23210093-23210189)
chr5 (64-116)||(24663677-24663729)
chr5 (56-126)||(28619224-28619292)
chr5 (1-106)||(25951354-25951459)
chr5 (63-107)||(21165300-21165344)
chr5 (41-82)||(22969413-22969454)
chr5 (86-198)||(23355785-23355898)
chr5 (43-108)||(36499483-36499547)
chr5 (13-108)||(20060911-20061007)
[»] chr3 (20 HSPs)
chr3 (1-206)||(26010962-26011167)
chr3 (1-116)||(23378563-23378679)
chr3 (13-128)||(15759663-15759779)
chr3 (13-117)||(4832492-4832597)
chr3 (15-123)||(24699032-24699140)
chr3 (1-126)||(13428679-13428803)
chr3 (3-118)||(4765665-4765780)
chr3 (1-171)||(16242858-16243030)
chr3 (35-228)||(8737019-8737214)
chr3 (1-126)||(4769845-4769970)
chr3 (35-228)||(9089260-9089452)
chr3 (56-206)||(26013741-26013889)
chr3 (13-108)||(29614580-29614676)
chr3 (1-108)||(7148829-7148937)
chr3 (1-113)||(27717893-27718003)
chr3 (56-113)||(14132040-14132097)
chr3 (13-119)||(15687001-15687108)
chr3 (1-81)||(16226655-16226736)
chr3 (17-107)||(9033467-9033558)
chr3 (56-108)||(45279852-45279904)
[»] scaffold0142 (1 HSPs)
scaffold0142 (1-205)||(20621-20825)
[»] scaffold0337 (2 HSPs)
scaffold0337 (1-195)||(17301-17492)
scaffold0337 (2-208)||(4627-4830)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-125)||(26829-26953)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-134)||(38806-38890)
[»] scaffold0039 (1 HSPs)
scaffold0039 (63-219)||(51462-51619)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-108)||(12999-13107)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-108)||(20922-21029)
[»] scaffold0320 (1 HSPs)
scaffold0320 (47-107)||(6502-6562)
[»] scaffold0167 (1 HSPs)
scaffold0167 (49-108)||(10221-10280)
[»] scaffold0161 (1 HSPs)
scaffold0161 (75-126)||(5041-5092)
[»] scaffold0555 (1 HSPs)
scaffold0555 (13-112)||(5647-5747)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-107)||(50484-50552)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4697534 - 4697765
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||| | ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  4697534 acattttgtataactttgttctctcacgccggtgctttgagtgttttagaatttctataagtgatttgcgactcattttccatatggaaaactactattt 4697633  T
Q  101 atacatagcaaaataact-gaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    |||||||| |||||||||  ||||||||||| ||| ||||||||||||||||||||| || ||||||||||| ||| | ||||||||||||||||| |||    
T  4697634 atacatagaaaaataactaaaaaaaaggcctgctccacgttcagcacttcttccattgaggaaccgcttgtctcccacattttcattgaggaaaccactg 4697733  T
Q  200 ctctttggattcaaattcttcccgcctcattg 231  Q
    ||||||||||||||||||||||||||| ||||    
T  4697734 ctctttggattcaaattcttcccgccttattg 4697765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 8140832 - 8141054
Alignment:
Q  4 ttctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttata 103  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||     
T  8140832 ttctatataactctttactctcgcgccggtacttcaagtgttttagaatttttataagtgatttgtgaccaattttccatatggaaaactactatttatt 8140931  T
Q  104 catagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctct 203  Q
    ||||| ||||||||||||||||  |  |||| ||| | |||||| |||||||| | |||| | | ||| ||| | ||| |||  ||||||||||| ||||    
T  8140932 catagaaaaataactgaaaaaaacctaactccacgattagcactccttccattga-aaactgttcgtctcccacgtttccatcaaggaaaccgcttctct 8141030  T
Q  204 ttg-gattcaaattcttcccgcct 226  Q
    |||  |||||||||||||||||||    
T  8141031 ttgaaattcaaattcttcccgcct 8141054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9409246 - 9409121
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||||||| |||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||| ||| || |||||||||||||||||    
T  9409246 acattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgacccgtttcccctatggaaaactactatt 9409147  T
Q  100 tatacatagcaaaataactgaaaaaa 125  Q
    ||||||||| |||||||||| |||||    
T  9409146 tatacataggaaaataactggaaaaa 9409121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 16675167 - 16675290
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||| | |||||| |||||| ||||| |||| ||||||||||||||||||||    
T  16675167 acattctgtataactctcttctctcgcaccggtacttcgagtgttttagaatatctataagggatttgtgacccgtttttcatatggaaaactactattt 16675266  T
Q  101 atacatagcaaaataactgaaaaaag 126  Q
    ||  |||||||||||| || ||||||    
T  16675267 at--atagcaaaataaatggaaaaag 16675290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 16928609 - 16928540
Alignment:
Q  46 ttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaata 115  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  16928609 ttagaatttctataagggatttgcgacctattttccatatggaaaactattatttatacatagtaaaata 16928540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 26654114 - 26654043
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatag-caaaataactgaaaaaag 126  Q
    |||||||||||||||| | ||||| |||||| |||||||||||||||||||||  |||||||||||||||||    
T  26654114 tataagtgatttgcgatctatttttcatatgaaaaactactatttatacatagtgaaaataactgaaaaaag 26654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12568196 - 12568307
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacc-cattttccatatggaaaactactat 98  Q
    ||||| ||||| |||||||||||  | ||||||| ||||||||| |  ||||||| |||||  ||||||||||| ||||||  ||||| |||||||||||    
T  12568196 acattatgtatgactcttttctcgagacgccggtacttcgagtgct--agaatttctataaaagatttgcgacctcattttt-atatgaaaaactactat 12568292  T
Q  99 ttatacatagcaaaa 113  Q
    |||||||||||||||    
T  12568293 ttatacatagcaaaa 12568307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11361725 - 11361833
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| | ||||||||||| |||||| ||||   ||||||||||||||||| | |||| ||||| | |||||  |||||| || ||||||||  ||||    
T  11361725 acattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgatctacgacctgttttccctacggaaaactcttatt 11361824  T
Q  100 tatacatag 108  Q
    |||||||||    
T  11361825 tatacatag 11361833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 16647169 - 16647221
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||||||||||| |||| | |||| ||||||||||| |||||||||    
T  16647169 tataagtgatttgcgacccttttttcttatgaaaaactactatatatacatag 16647221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 18558412 - 18558369
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccattttcca 82  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||    
T  18558412 gagtgttgtagaatttctataaatgatttgcgacccattttcca 18558369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 12810026 - 12809946
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttc 80  Q
    |||||||||||||||| |||| |  | |||||||  || ||||||| |||||||| ||||| || ||||||||||||||||    
T  12810026 acattctgtataactcgtttccccagacgccggtagtttgagtgttgtagaatttctataaatggtttgcgacccattttc 12809946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24924935 - 24925039
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| ||||||||||||   ||||||| ||||||||| |  |||||| | ||||||||||||||| || |||| || ||| |||||||||||     
T  24924935 acattatgtatgactcttttctctaaacgccggtacttcgagtgct--agaattct-ataagtgatttgcgaaccttttttcaaatgaaaaactactata 24925031  T
Q  100 tatacata 107  Q
    ||||||||    
T  24925032 tatacata 24925039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31404124 - 31403904
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  31404124 acattctgtataactcttttctctcgcgccggtacttcgagtgttttagaatttcaataagtgatttgcgacccattttcaatatggaaaactactattt 31404025  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgc 200  Q
    |||||||||||||||||||||||||  |  |||| | |  || ||||| ||| || ||||| ||||||||| ||| | ||| |||  ||||||||||| |    
T  31404024 atacatagcaaaataactgaaaaaaatctaactccatgaccaacactttttcaatcaagaacccgcttgtctcccacgtttccatcaaggaaaccgcttc 31403925  T
Q  201 tctttg-gattcaaattcttc 220  Q
    ||||||  |||||||||||||    
T  31403924 tctttgaaattcaaattcttc 31403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 29891343 - 29891148
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||| ||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||| |||| |||||||| |||||||||||    
T  29891343 acattttgtataaatcttttctctcgcgccgatactttgagtgttttataatttctataagtgatctgcgacccgtttttcatatggacaactactattt 29891244  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaacc 195  Q
    |||||||||||||||||||||||||  |  |||| | | ||| |||||||||||||  || ||||||||||| ||| | ||| |||||||||||||    
T  29891243 atacatagcaaaataactgaaaaaatcctaactccaagatcaacacttcttccatttggacaaccgcttgtctcccacgtttccattgaggaaacc 29891148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 24543956 - 24544156
Alignment:
Q  7 tgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacat 106  Q
    ||||||| ||||||||||||||||| | ||||||||||| |  ||||| ||||||||||||| ||||| |||| | ||||||||||||||||||||||||    
T  24543956 tgtataaatcttttctctcgcgccgatacttcgagtgttgtcaaatttctataagtgatttgtgacccgtttttcctatggaaaactactatttatacat 24544055  T
Q  107 agcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat-taagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctcttt 205  Q
    || |||||||||| |||||  |  |||| ||| |||||||||||||||| |||   |||||||||| ||| | ||| |||||||||||||||| ||||||    
T  24544056 agtaaaataactggaaaaaacctaactccacgatcagcacttcttccatgtaaactaccgcttgtctcccacgtttccattgaggaaaccgcttctcttt 24544155  T
Q  206 g 206  Q
    |    
T  24544156 g 24544156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26650970 - 26651088
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||  |||||| |||||||||||  ||||    
T  26650970 acattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttgcgacctgttttccctatggaaaactcttatt 26651069  T
Q  100 tatacatagcaaaataact 118  Q
    ||||||||| |||||||||    
T  26651070 tatacatagaaaaataact 26651088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 17402853 - 17402979
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||||||| |||||||||| |||||| ||| ||||||||||||||| | |||| |||||||||||||  |||||| |||||| ||||||||||    
T  17402853 acattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgacctgttttccttatggagaactactatt 17402952  T
Q  100 tatacatagcaaaataactgaaaaaag 126  Q
    ||||||||  |||||||||| ||||||    
T  17402953 tatacataagaaaataactggaaaaag 17402979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 32890459 - 32890580
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| ||| |||||||| | ||||||| ||||||||| |  |||||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  32890459 acattatgtatgactattttctctagacgccggtacttcgagtgct--agaatttt-ataagtgatttgcgacctattttcgatatggaaaactactatt 32890555  T
Q  100 tatacatagcaaaataactgaaaaa 124  Q
    ||||||||| ||||||| |||||||    
T  32890556 tatacatagtaaaataattgaaaaa 32890580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 17676681 - 17676749
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaa 124  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17676681 tataagtgatttgtgacccattttccatatgaaaaactactatttatacatagtaaaataactgaaaaa 17676749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 25520490 - 25520335
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| |||||||||||||||||||   |||||||||||||| |||| | |||| ||||||||| |||| |||||| |||||||||||| ||||    
T  25520490 acattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgcaacccgttttccctatggaaaactattatt 25520391  T
Q  100 tatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat 155  Q
    ||||||||  || ||||||| |||||| |  |||| ||  ||| ||||||||||||    
T  25520390 tatacataataagataactggaaaaagcctaactccacaatcaacacttcttccat 25520335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18929366 - 18929483
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||| | ||||||| ||||||| ||||||||||||||||||| | |||| ||||||||| ||||||||||| | |||||||||||||||    
T  18929366 acattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgatttgcaacccattttccctttggaaaactactatt 18929465  T
Q  100 tatacatagcaaaataact 118  Q
    ||| ||||| |||||||||    
T  18929466 tatgcatag-aaaataact 18929483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15438079 - 15437954
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||||||| |||||||||||| | || |||| ||||||||| |  ||||||| ||| |||||||||||||| ||||| |||||| |||||||| |||    
T  15438079 acattctgtatgactcttttctctagacgtcggtacttcgagtgct--agaatttctattagtgatttgcgacctatttttcatatgaaaaactacaatt 15437982  T
Q  100 tatacatag-caaaataactgaaaaaag 126  Q
    |||||||||  |||||||||||||||||    
T  15437981 tatacatagtaaaaataactgaaaaaag 15437954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 17637941 - 17637995
Alignment:
Q  70 gacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaa 124  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17637941 gacccattttccatatgaaaaactactatttatacatagtaaaataactgaaaaa 17637995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 19878974 - 19879048
Alignment:
Q  35 cttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||| |||||||||||||| | |||| |||||||||||||| |||| | |||||||||||||||||| |||||||    
T  19878974 cttctagtgttttagaattctgtataggtgatttgcgacccgtttttcctatggaaaactactatttttacatag 19879048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 20478332 - 20478252
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttcca 82  Q
    |||||||||||||||| |||| |||||||||||  || ||||||| ||||||| | ||||  |||||||||||||||||||||    
T  20478332 acattctgtataactcgtttccctcgcgccggtagtttgagtgttgtagaattatgtata--tgatttgcgacccattttcca 20478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 21498104 - 21498047
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaa 113  Q
    ||||| |||||||||||| ||||  |||||| ||||||||||||||||||||| ||||    
T  21498104 tataaatgatttgcgacctatttctcatatgaaaaactactatttatacatagtaaaa 21498047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 2482137 - 2482205
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaa 124  Q
    |||||||||||||||||||||||| |  ||| |||||| ||||||||| |||| || || |||||||||    
T  2482137 tataagtgatttgcgacccatttttcgaatgaaaaacttctatttataaatagtaagatgactgaaaaa 2482205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27190047 - 27190007
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccatttt 79  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  27190047 gagtgttgtagaatttttataaatgatttgcgacccatttt 27190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27839861 - 27839821
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccatttt 79  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  27839861 gagtgttgtagaatttttataaatgatttgcgacccatttt 27839821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27123672 - 27123446
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| |||||||||||||||||||||  |||| ||  ||||||| |||||||| ||||| ||||||||||| |||||| | ||||||||||||||||||    
T  27123672 acattatgtataactcttttctctcgcatcggtact--gagtgttgtagaatttctataattgatttgcgactcatttttcctatggaaaactactattt 27123575  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgc 200  Q
    ||||||||||||||||||| |||||| |  |||| ||| |||||||| ||||||||  | ||||||||||| ||| | ||| ||||||||||| |||| |    
T  27123574 atacatagcaaaataactggaaaaagtctaactccacgatcagcactccttccatttgggaaccgcttgtctcccacgtttccattgaggaaaacgcttc 27123475  T
Q  201 tctttg-gattcaaattcttcccgcctca 228  Q
    ||||||  ||||||| | |||||||||||    
T  27123474 tctttgaaattcaaaattttcccgcctca 27123446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 13110279 - 13110398
Alignment:
Q  7 tgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacat 106  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  13110279 tgtataactcttttctctctcgccggtacttcgagtgttgtagaatttctataagtgatttgcgacctattttccctatggaaaactactatttttacat 13110378  T
Q  107 agcaaaataactgaaaaaag 126  Q
    ||||||||||||| ||||||    
T  13110379 agcaaaataactggaaaaag 13110398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 16600633 - 16600839
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| |||| | ||||||||||||||||||    
T  16600633 acattatgtataactctattctctcgcgccggtacttcgagtgttgtagaatttctataagtgatttgcaacccgtttttcctatggaaaactactattt 16600732  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    ||||||| |||||| | || |||||| |  || | | | ||| ||||||||||||| ||| |||||| |||  ||||| ||| ||||||||||||||||     
T  16600733 atacataacaaaattattggaaaaagcctaacaccatgatcaacacttcttccatttagacaaccgcctgtttcccgcatttccattgaggaaaccgctt 16600832  T
Q  200 ctctttg 206  Q
    |||||||    
T  16600833 ctctttg 16600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 18672195 - 18671997
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||||||||||||| |||| || ||||||||||| |||||||| |||||||||||||||| | ||||||| |||| |||||||||||||    
T  18672195 acattttgtataactcttttctctctcgccagtacttcgagtgttgtagaatttctataagtgatttgcgaactattttccttatgaaaaactactattt 18672096  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgct 198  Q
     |||||||||||||||||| |||||| |  | ||  |  |||||||||| ||||||  || ||||||||||| ||| | ||||||||||| || |||||    
T  18672095 ttacatagcaaaataactggaaaaagcctcattccccaatcagcacttcctccatttggacaaccgcttgtctcccacattttcattgagaaatccgct 18671997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9286418 - 9286315
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||| |||||||||||||| |||||| ||||||||||||||||||    
T  9286418 acattttgtataactattttctctcgcaccggtacttcgagtgttgtagaatttctatatgtgatttgcgacccgttttccctatggaaaactactattt 9286319  T
Q  101 atac 104  Q
    ||||    
T  9286318 atac 9286315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 22713685 - 22713460
Alignment:
Q  3 attctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttat 102  Q
    ||||| ||||| |||||||| ||||| || |  |||||| | | |||||||| ||||| |||| |||||||| |||||| ||||||||| ||||||||||    
T  22713685 attctatataaatcttttctatcgcgtcgataattcgagagctgtagaatttctataaatgatatgcgacccgttttccctatggaaaagtactatttat 22713586  T
Q  103 acatagcaaaataactgaaaaaaggccta-ctcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgc 200  Q
    |||||||||||||||||  |||||||||| ||| ||| ||| |||||||||||||  || ||||||||||| ||| | ||| |||| ||||||||| | |    
T  22713585 acatagcaaaataactg-gaaaaggcctatctccacgatcaacacttcttccatttggacaaccgcttgtctcccacgtttccattaaggaaaccgtttc 22713487  T
Q  201 tctttg-gattcaaattcttcccgcct 226  Q
    ||||||  |||| || |||||||||||    
T  22713486 tctttgaaattcgaaatcttcccgcct 22713460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 25095124 - 25095244
Alignment:
Q  7 tgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgc-gacccattttccatatggaaaactactatttataca 105  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||| | |   ||||  ||||||||||||||||||||||||    
T  25095124 tgtataactcttttatctcgcgccggtacttcgggtgttttagaatttctataagtgatttgcggtctgttttttaatatggaaaactactatttataca 25095223  T
Q  106 tagcaaaataactgaaaaaag 126  Q
     ||||||||||||| ||||||    
T  25095224 cagcaaaataactggaaaaag 25095244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 28371164 - 28371271
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||| ||||| ||| | | ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  28371164 acattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgcgacccattttccctatggaaaactactatt 28371263  T
Q  100 tatacata 107  Q
    ||||||||    
T  28371264 tatacata 28371271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 9218221 - 9218331
Alignment:
Q  16 cttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaat 114  Q
    ||||||||||||| |||| ||||||||||||||||||| | |||| |||||||||||||| |||||| |||||||||| ||||||||||||||  ||| |    
T  9218221 cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcgacccgttttccctatggaaaacaactatttatacataataaact 9218320  T
Q  115 aactgaaaaaa 125  Q
    ||||| |||||    
T  9218321 aactgcaaaaa 9218331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23540312 - 23540204
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| | |||||||||| | |||||| ||| |||| |||||||||| | |||| ||||||||| |||| |||||| |||||||||||||||||    
T  23540312 acattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtataggtgatttgcaacccgttttccctatggaaaactactatt 23540213  T
Q  100 tatacatag 108  Q
    |||||||||    
T  23540212 tatacatag 23540204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 24577409 - 24577311
Alignment:
Q  28 gccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaag 126  Q
    |||||| |||||| |||||||||||| | |||| ||||||||| |||| |||||| |||| ||||||||||||||||||||  |||||||||| ||||||    
T  24577409 gccggtacttcgattgttttagaattctgtataggtgatttgccacccgttttcc-tatgaaaaactactatttatacatattaaaataactggaaaaag 24577311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11030721 - 11030844
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||| | || |||||||||||||| ||  |||||| ||||| |||||||| |||| |||| | |||| ||||||  ||||    
T  11030721 acattctatatgactcttttctctagacgtcggtgcttcgagtgcttg-gaatttctataaatgatttgcaacccgtttttcctatgaaaaactcttatt 11030819  T
Q  100 tatacatagcaaaataactgaaaaa 124  Q
    ||||||||| ||||||| |||||||    
T  11030820 tatacatagaaaaataagtgaaaaa 11030844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 25059779 - 25059899
Alignment:
Q  7 tgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgc-gacccattttccatatggaaaactactatttataca 105  Q
    ||||||| | |||| |||||||  |||  ||||||||||||||||||| |||||||||||||| | |   ||||| ||||||||||||||||||||||      
T  25059779 tgtataatttttttatctcgcgttggtatttcgagtgttttagaatttctataagtgatttgcggtctgtttttcaatatggaaaactactatttatatg 25059878  T
Q  106 tagcaaaataactgaaaaaag 126  Q
     || |||||||||| ||||||    
T  25059879 cagtaaaataactggaaaaag 25059899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 22454697 - 22454640
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaa 113  Q
    |||||||||||||||||||||||| | |||| ||||||||||| ||||||||| ||||    
T  22454697 tataagtgatttgcgacccatttttcttatgaaaaactactatatatacataggaaaa 22454640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 5892712 - 5892780
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatag-caaaataactgaaaa 123  Q
    ||||| ||||||| ||||| |||| |||||| ||||||||||| |||||||||  ||||||||||||||    
T  5892712 tataaatgatttgtgacccgtttttcatatgaaaaactactatatatacatagtgaaaataactgaaaa 5892780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 13111123 - 13111190
Alignment:
Q  140 tcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgctctttg 206  Q
    |||||||||||||||||  || ||||||||||| ||| | |||||||||||||| ||||| |||||||    
T  13111123 tcagcacttcttccatttggacaaccgcttgtctcccacgttttcattgaggaatccgcttctctttg 13111190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 32352299 - 32352350
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    ||||||||||||||||||| |||| | |||| ||||||||||| ||||||||    
T  32352299 tataagtgatttgcgacccgtttttcttatgaaaaactactatatatacata 32352350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 32368960 - 32369011
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    ||||||||||||||||||| |||| | |||| ||||||||||| ||||||||    
T  32368960 tataagtgatttgcgacccgtttttcttatgaaaaactactatatatacata 32369011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 23355589 - 23355631
Alignment:
Q  76 ttttccatatggaaaactactatttatacatagcaaaataact 118  Q
    |||||||| || ||||||||||||||||||||| |||||||||    
T  23355589 ttttccatttgcaaaactactatttatacatagtaaaataact 23355631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 24093230 - 24093188
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccattttcc 81  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||    
T  24093230 gagtgttgtagaatttctataaatgatttgcgacccattttcc 24093188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 15340901 - 15340832
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagca-aaataactgaaaaa 124  Q
    ||||| |||||||||||| ||||| |||||| ||||||| ||||||||| ||| | |||||||| |||||    
T  15340901 tataaatgatttgcgaccaatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaa 15340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 15429966 - 15429897
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagca-aaataactgaaaaa 124  Q
    ||||| |||||||||||| ||||| |||||| ||||||| ||||||||| ||| | |||||||| |||||    
T  15429966 tataaatgatttgcgaccaatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaa 15429897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 15521270 - 15521201
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagca-aaataactgaaaaa 124  Q
    ||||| |||||||||||| ||||| |||||| ||||||| ||||||||| ||| | |||||||| |||||    
T  15521270 tataaatgatttgcgaccaatttttcatatgaaaaactattatttatacctagaagaaataactaaaaaa 15521201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13202156 - 13201930
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||| |||||||| |||||||||||||||||   |||| | |||| |||||||||||||    
T  13202156 acattatgtataactattttctctcgcgccggtatttcgagtgttgtagaatttctataagtgatttgcgacatgtttttcctatgaaaaactactattt 13202057  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    ||||||||||||||||||| |||||| |  |||| ||| ||||||||||||||||| ||| ||||||||||| ||| | |||  |||||| |||||||      
T  13202056 atacatagcaaaataactggaaaaagcctaactccacgatcagcacttcttccatttagacaaccgcttgtctcccacgtttctattgagaaaaccgcct 13201957  T
Q  200 ctcttt-ggattcaaattcttcccgcc 225  Q
    ||||||   ||||||| ||||||||||    
T  13201956 ctctttaaaattcaaaatcttcccgcc 13201930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 36571747 - 36571594
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| |||||||||||||||||||| ||  || ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||     
T  36571747 acattatgtataactcttttctctcgtgctagtacttcgagtgttgtagaatttctataagtgatttgcgacccatttttcctatggaaaactactatt- 36571649  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccatt 156  Q
     || |||||||||||||||||||||| |  |||| ||| ||| |||||||||||||    
T  36571648 -tagatagcaaaataactgaaaaaagcctaactccacggtcaacacttcttccatt 36571594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17615338 - 17615544
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||| |||||||||| |||| |||| || ||||||||||| |||||||| ||||||||||| | ||||| |||||| ||||||||||||||||||    
T  17615338 acattatgtgtaactcttttttctcccgcctgtacttcgagtgttgtagaatttctataagtgattcgtgacccgttttccctatggaaaactactattt 17615437  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat-taagaaaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    || |||||||||||||||| |||||| |  |||| ||  ||| |||||||| ||| ||  |||||||||||| ||| | |||||||||||||| ||| |     
T  17615438 atgcatagcaaaataactggaaaaagcctaactccacaatcaacacttcttacatgtagaaaaccgcttgtctcccacgttttcattgaggaacccgatt 17615537  T
Q  200 ctctttg 206  Q
    |||||||    
T  17615538 ctctttg 17615544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 20146272 - 20146372
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaa 111  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  20146272 actcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgacccattttccatatggaaaactcttatttatacaaagcaa 20146371  T
Q  112 a 112  Q
    |    
T  20146372 a 20146372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 33103095 - 33103222
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttcca-tatggaaaactactat 98  Q
    ||||||| ||| ||||||||||||| || |||| ||||||||||||||||||| | |||| |||||||||||||  ||||||  ||||||||||||||||    
T  33103095 acattctatatgactcttttctctcacgtcggtacttcgagtgttttagaattatgtataggtgatttgcgacctgttttcccctatggaaaactactat 33103194  T
Q  99 ttatacatagcaaaataactgaaaaaag 126  Q
    ||||||||| ||||||||||| ||||||    
T  33103195 ttatacataccaaaataactggaaaaag 33103222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 20866337 - 20866503
Alignment:
Q  41 gtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgtt 140  Q
    ||||| || ||||| ||||||||||||||  ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |  | || | | |    
T  20866337 gtgttgtaaaatttctataagtgatttgctccccgttttccctatggaaaactactatttatacatagtaaaataactgaaaaaagcctaattctaagat 20866436  T
Q  141 cagcacttcttccat-taagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctctttg 206  Q
    || |||||||||||| |||  ||||||||||| ||| | ||| |||||||||||| ||| |||||||    
T  20866437 caacacttcttccatgtaaacaaccgcttgtctcccacatttccattgaggaaactgcttctctttg 20866503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 30382957 - 30382802
Alignment:
Q  64 atttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaac 163  Q
    |||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||  |||| ||| ||| ||||  || ||| |||||||    
T  30382957 atttgcaacccatttttcatatggaaaactactatttatacattgtaaaataactgaaaaaaggctaactccacgatcaacactcttttcatcaagaaac 30382858  T
Q  164 cgcttgtcccccgctttttcattgaggaaaccgctgctctttggattcaaattcttc 220  Q
    ||||||| | || | |||||||  ||||||| | || |||||| |||||||||||||    
T  30382857 cgcttgt-ctccacgttttcatcaaggaaactgttgttctttgaattcaaattcttc 30382802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 22620107 - 22619996
Alignment:
Q  10 ataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagc 109  Q
    |||||| ||||||||||| | ||| ||||||||||| |||||||| |||||||||||| ||||   |||||| ||||||||| |||||||||||||||||    
T  22620107 ataactattttctctcgctctggtacttcgagtgttgtagaatttctataagtgatttacgacttgttttccctatggaaaattactatttatacatagc 22620008  T
Q  110 aaaataactgaa 121  Q
    ||||| ||||||    
T  22620007 aaaattactgaa 22619996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 11013920 - 11013714
Alignment:
Q  3 attctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactattta 101  Q
    ||||| ||| |||||||||||||  || |||  ||||||||||||| |||||| |||| ||||||||| ||||||||| | ||||||||||| |||| ||    
T  11013920 attctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgcaacccattttacctatggaaaactcctatata 11013821  T
Q  102 tacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgc-tttttcattgaggaaaccgctg 199  Q
    ||||||| |||||||||| ||||||  | |  | ||| ||||||||||||||||  ||| |||| |||||| ||| | || | |||||||||||||| |     
T  11013820 tacatagaaaaataactggaaaaagtacaatcccacgatcagcacttcttccatgtagacaaccacttgtctcccacgttctccattgaggaaaccgttt 11013721  T
Q  200 ctctttg 206  Q
    |||||||    
T  11013720 ctctttg 11013714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 20150526 - 20150420
Alignment:
Q  2 cattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    |||| ||||| ||| |||||||||||| |||| ||||||||||| ||||||| | |||| |||||||| ||||| |||||| |||||||||| |||||||    
T  20150526 cattttgtatgacttttttctctcgcgtcggtacttcgagtgttgtagaattatgtataggtgatttgagacccgttttccctatggaaaacaactattt 20150427  T
Q  101 atacata 107  Q
    |||||||    
T  20150426 atacata 20150420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 22607916 - 22607823
Alignment:
Q  9 tataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttat 102  Q
    |||||||||||||||| ||| |||| |||||| |||| ||||| ||  |||||||||||||||||| ||| |  ||||||||| ||||||||||    
T  22607916 tataactcttttctcttgcgacggtacttcgattgttatagaaattccataagtgatttgcgacccgtttcctctatggaaaattactatttat 22607823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 13232803 - 13232720
Alignment:
Q  40 agtgttttagaattttt-ataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaa 122  Q
    |||||||||||||| |  ||| ||||||||||| || |||||| |||||||||||| ||||||||||||  |||||||||||||    
T  13232803 agtgttttagaattatgcataggtgatttgcgatccgttttccctatggaaaactattatttatacataataaaataactgaaa 13232720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 33379338 - 33379283
Alignment:
Q  53 ttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||||||||||||  ||||| |||||| ||||||| ||||||| |||||    
T  33379338 ttttataagtgatttgcgactaatttttcatatgaaaaactattatttatgcatag 33379283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22533766 - 22533685
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttcc 81  Q
    |||||||||||||||| |||| || | | |||||  || || |||| |||||||| ||||| ||||||||||||||||||||    
T  22533766 acattctgtataactcgtttccctagactccggtagtttgaatgttgtagaatttctataaatgatttgcgacccattttcc 22533685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 963 - 810
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| |||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||||||||| |||| |||||| ||||||||||||||||||    
T  963 acattatgtataactcttctttctcgcgccggtacttcgagtgttttggaatttctataagtgatttgcaacccgttttccgtatggaaaactactattt 864  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccatt 156  Q
    ||||||||||||||||||||||||   || |||| ||| ||| |||||||||||||    
T  863 atacatagcaaaataactgaaaaa--tccaactccacgatcaacacttcttccatt 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 10649311 - 10649085
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||  ||||| ||||||||||||||||| |||||||| |||||| |||||||||||    
T  10649311 acattctttataactcttttctctcgtgccggtacttcgagtgttttgaaatttctataagtgatttgcgactcattttccctatggacaactactattt 10649212  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    |||||||| ||||||| || ||||||    | || ||  ||| |||||||||||||  || ||||||| ||| | | | ||| |||||||||||| ||||    
T  10649211 atacatagaaaaataattggaaaaagcataagtccacaatcatcacttcttccatttggacaaccgctagtctctcacgtttccattgaggaaactgctg 10649112  T
Q  200 ctctttggattcaaattcttcccgcct 226  Q
    ||  ||||||| |||||||||||||||    
T  10649111 ctacttggattgaaattcttcccgcct 10649085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 17600661 - 17600787
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||| |||||| |||||| ||||||||||||||||||| | |||| |||||||||||| | |||||| |||||||||||||||||    
T  17600661 acattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgacacgttttccttatggaaaactactatt 17600760  T
Q  100 tatacatagcaaaataactgaaaaaag 126  Q
    ||||||||  |||||||||| ||||||    
T  17600761 tatacataagaaaataactggaaaaag 17600787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 18084370 - 18084479
Alignment:
Q  7 tgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacat 106  Q
    ||||||||||||||||||| || |||| | || ||||||||||||||| |||||| ||||| || | | |||||||||||||||||||||||||||||||    
T  18084370 tgtataactcttttctctcacgtcggtacctcaagtgttttagaatttctataagcgatttacggctcgttttccatatggaaaactactatttatacat 18084469  T
Q  107 agcaaaataa 116  Q
    ||||||||||    
T  18084470 agcaaaataa 18084479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4173531 - 4173376
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||||| || | ||||||||||||||||||| | |||| | |||||||||||| |||||| |||||||| ||| ||||    
T  4173531 acattctttatgactcttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgacccgttttccctatggaaatctaatatt 4173432  T
Q  100 tatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat 155  Q
    |||||||||||||||| ||| |||||| |  |||  ||| ||| ||||||||||||    
T  4173431 tatacatagcaaaatagctggaaaaagcctaacttcacgatcaacacttcttccat 4173376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5531778 - 5531657
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| || |||||||||| |||| |||||||| |||||||| || |||||    
T  5531778 acattttgtataactcttttctctcgcaccggtacttcgagtgttgtataatttctacaagtgatttgtgacctattttccagatggaaaattagtattt 5531679  T
Q  101 atacatagcaaaataactgaaa 122  Q
    |||||||| | ||||| |||||    
T  5531678 atacatagtacaataaatgaaa 5531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9022581 - 9022360
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaacta-ctat 98  Q
    ||||||||||| ||||||| |||| | || |||| ||||||||| || ||||||| |||||  |||||| ||||||||||||||||||||||||| ||||    
T  9022581 acattctgtatgactctttactctagacgtcggtacttcgagtgctt-agaatttctataaaagatttg-gacccattttccatatggaaaactacctat 9022484  T
Q  99 ttatacatagcaaaataactgaaaaaaggcctact-caacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgc 197  Q
    |||||||| | ||||||| |  ||||||||  ||| | ||| ||||||||||||||||  |||||| | ||||| ||| | |||||||  |||||||||     
T  9022483 ttatacatcgaaaaataa-tttaaaaaggctaactgccacgatcagcacttcttccatcgagaaactgtttgtctcccacgttttcatcaaggaaaccgt 9022385  T
Q  198 tgctctttggattcaaattcttccc 222  Q
    || |||||||||||||| |||||||    
T  9022384 tgttctttggattcaaactcttccc 9022360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 2547039 - 2547156
Alignment:
Q  2 cattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    |||||| ||| ||| |||||||||| | |||| ||||||||||||||||||| | |||| |||||||||||||| |||||| |||||||||||| || ||    
T  2547039 cattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcgacccgttttccctatggaaaactattactt 2547138  T
Q  101 atacatagcaaaataact 118  Q
    |||||||| |||||||||    
T  2547139 atacatagaaaaataact 2547156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14987165 - 14987060
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||| | |||| ||||| ||||||||||||||| |||||||||||  ||||    
T  14987165 acattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatggaaaactcttatt 14987066  T
Q  100 tataca 105  Q
    ||||||    
T  14987065 tataca 14987060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 15416776 - 15416671
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||| | |||| ||||| ||||||||||||||| |||||||||||  ||||    
T  15416776 acattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatggaaaactcttatt 15416677  T
Q  100 tataca 105  Q
    ||||||    
T  15416676 tataca 15416671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 18046463 - 18046571
Alignment:
Q  16 cttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatg-gaaaactactatttatacatagcaaaat 114  Q
    ||||| |||||||||||| |||| | ||||||||||||| ||||||||| |||||||| ||||||||||||  |||||||||||||||| ||||||||||    
T  18046463 cttttttctcgcgccggtacttcaattgttttagaatttctataagtga-ttgcgacctattttccatatgaaaaaactactatttatatatagcaaaat 18046561  T
Q  115 aactgaaaaa 124  Q
    |||| |||||    
T  18046562 aactaaaaaa 18046571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 41132044 - 41132119
Alignment:
Q  51 atttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaag 126  Q
    |||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  41132044 atttttataaatgatttgtgacccgttttccatctggaaaactactatttatacatagtaaaataactgaaaaaag 41132119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20145942 - 20146050
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||| |||||||||||| || ||||||||||||||||||| |  ||  |||||||||||||| |||| | |||| ||||||||||||    
T  20145942 acattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgcgacccgttttacctatgaaaaactactatt 20146041  T
Q  100 tatacatag 108  Q
    |||||||||    
T  20146042 tatacatag 20146050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 3743542 - 3743637
Alignment:
Q  29 ccggtgcttcgagtgtttt-agaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaa 122  Q
    ||||| ||||||||||||| |||||| | |||| |||||||||||||| |||||  | |||||||||||||||||||||||| |||||||||||||    
T  3743542 ccggtacttcgagtgtttttagaattatgtataggtgatttgcgacccgttttctctttggaaaactactatttatacatagaaaaataactgaaa 3743637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24832499 - 24832606
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||| ||| |||||||||||| |||||| | |||||||||||||| | | | |||| | |||||||||||| |||||| |||| ||||||| |||||    
T  24832499 acattctttatgactcttttctcttgcgccgatacttcgagtgttttaaattctgtataggcgatttgcgacccgttttccctatgaaaaactattattt 24832598  T
Q  101 atacatag 108  Q
    ||||||||    
T  24832599 atacatag 24832606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 25621133 - 25620933
Alignment:
Q  13 actcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag-ca 110  Q
    |||||||||||| | ||||||| ||||||||| |  |||||||| ||||||||||||||||| ||||| |||||| |||||||||||||| ||||||  |    
T  25621133 actcttttctctagacgccggtacttcgagtgct--agaatttt-ataagtgatttgcgacctatttttcatatgaaaaactactatttacacatagtaa 25621037  T
Q  111 aaataactgaaaaaaggcctact-caacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctctttggat 209  Q
    |||||||| | |||| ||  ||| | |||  || |||||||||||| || |||| | ||||||||| | | |||||| |||||||||||||| |||| ||    
T  25621036 aaataact-agaaaaagctaactgccacgaacaacacttcttccatcaa-aaactgattgtcccccacgtcttcattaaggaaaccgctgct-tttgaat 25620940  T
Q  210 tcaaatt 216  Q
    |||||||    
T  25620939 tcaaatt 25620933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 7524730 - 7524673
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaa 113  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||    
T  7524730 tataagtgatttgtgacctattttccatatgaaaaactactatttatacatagtaaaa 7524673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 4978869 - 4978745
Alignment:
Q  2 cattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    |||| ||||| |||||||| ||| | ||||||| ||||||||| |  ||||||| ||||||| |||||||||| ||||| |||||| ||||||||  |||    
T  4978869 cattatgtatgactcttttatctagacgccggtacttcgagtgct--agaatttctataagtaatttgcgacctatttttcatatgaaaaactacatttt 4978772  T
Q  101 atacatag-caaaataactgaaaaaag 126  Q
    ||||||||  |||||||||| ||||||    
T  4978771 atacatagtgaaaataactggaaaaag 4978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10310066 - 10309985
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttcc 81  Q
    |||||||||||||||| |||| || | |||||||  || ||||||| |||||||| ||||| ||||||||||||||||||||    
T  10310066 acattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccattttcc 10309985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12469044 - 12469096
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||||||||||||||||||||||| |||| ||||||||||| | |||||||    
T  12469044 tataagtgatttgcgacccattttccttatgaaaaactactatatgtacatag 12469096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 4240174 - 4240235
Alignment:
Q  144 cacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctcttt 205  Q
    ||||||||| |||  ||||||||||||| |||   |||||||||||||||||||| ||||||    
T  4240174 cacttcttctatttggaaaccgcttgtctcccatgttttcattgaggaaaccgcttctcttt 4240235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12331026 - 12331106
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttcc 81  Q
    |||||||||||||||| |||| || | |||||||  || ||||||| ||||||| | |||| ||||||||||||||||||||    
T  12331026 acattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaattct-ataaatgatttgcgacccattttcc 12331106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 20923401 - 20923441
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccatttt 79  Q
    ||||||| |||||||| ||||| ||||||||||||||||||    
T  20923401 gagtgttgtagaatttctataaatgatttgcgacccatttt 20923441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14763010 - 14762802
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    |||||||||||||||||||||||||| | | || ||||||||| | |||||||| |||||||||||||||||| ||||||| || |||||||||||||||    
T  14763010 acattctgtataactcttttctctcgtgtcagtacttcgagtgatgtagaatttctataagtgatttgcgacctattttccctacggaaaactactattt 14762911  T
Q  101 atacatagcaaaat-aactgaaaaaaggcct-actcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgc 197  Q
      |||||||||||| ||||||||||| |||| |||| ||| ||| |||||| ||||||  || ||||||||||| ||| | ||| | |||||||||||||    
T  14762910 taacatagcaaaataaactgaaaaaaagcctaactccacggtcaacacttcctccatttggacaaccgcttgtctcccacgtttcccttgaggaaaccgc 14762811  T
Q  198 tgctctttg 206  Q
    | |||||||    
T  14762810 ttctctttg 14762802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16142911 - 16143038
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||||||| ||||||||||||   |||| || ||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  16142911 acattctgtatgactcttttctctaaacgccagtacttcgagtgctt-agaatttatataaatgatttgcgacccattttccatatggaaaactactatt 16143009  T
Q  100 tatacatagcaaaataactgaaaaaaggc 128  Q
    ||||||||| |||||||||||||||||||    
T  16143010 tatacatagtaaaataactgaaaaaaggc 16143038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 17296278 - 17296075
Alignment:
Q  17 ttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataa 116  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||| | | |||||    
T  17296278 ttttctctcgcgccggtacttcaagtgttttagaatttctataagtgatttgtgacccattttccctatgg-aaactactatttatacatggtacaataa 17296180  T
Q  117 ctgaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctctttggattcaaatt 216  Q
    ||  |||||| ||      ||| ||| |||||||||||||||| | || |||||| ||| | | ||  ||||||||||| |||| |||| |||||||| |    
T  17296179 ctagaaaaagccc------acgatcaccacttcttccattaaggagccacttgtctcccacgtctttgttgaggaaaccactgcactttagattcaaaat 17296086  T
Q  217 cttcccgcctc 227  Q
    ||||| |||||    
T  17296085 cttcctgcctc 17296075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 16142635 - 16142730
Alignment:
Q  28 gccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaa 124  Q
    |||||| ||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16142635 gccggtacttcgagtgctt-agaatttctataaatgatttgcgacccattttccatatggaaaactactatttatacatagtaaaataactgaaaaa 16142730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 16143217 - 16143431
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| |||||||||||||||| | ||||||| || || ||| || ||||||| ||||| |||||||||||| ||||||||||||| |||||||||||    
T  16143217 acattctatataactcttttctctagacgccggtactacgggtgctt-agaatttctataattgatttgcgaccgattttccatatgg-aaactactatt 16143314  T
Q  100 tatacatagcaaaataactgaaaaaaggcctact-caacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgct 198  Q
    ||||||||| |||||||| |||||||||   ||| | ||  ||||| |||||||||| || ||||| ||| |||| | | | ||||||||||||||||||    
T  16143315 tatacatagtaaaataacagaaaaaaggataactgccacaatcagctcttcttccatcaa-aaacctcttatcccgcacgtcttcattgaggaaaccgct 16143413  T
Q  199 gctctttggattcaaatt 216  Q
     || |||| |||||||||    
T  16143414 cctttttgaattcaaatt 16143431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 17524919 - 17525045
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||||||||| |||| |  ||||||||||||||||||| | |||| |||||||||||||  |||||| ||  |||||||||||||    
T  17524919 acattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgacctgttttccctacagaaaactactatt 17525018  T
Q  100 tatacatagcaaaataactgaaaaaag 126  Q
    ||||||||| |||||||||||||||||    
T  17525019 tatacatagaaaaataactgaaaaaag 17525045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 27763763 - 27763927
Alignment:
Q  64 atttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaac 163  Q
    |||||||||  ||||| |||| ||||||||| |||||||||| ||  ||||||||||||||| ||  |||| | | ||| |||| |||||||  ||||||    
T  27763763 atttgcgacttatttttcataaggaaaactattatttatacagagtgaaataactgaaaaaatgctaactccatgatcaacactccttccatcgagaaac 27763862  T
Q  164 cgcttgtcccccgctttttcattgaggaaaccgctgctctttggattcaaattcttcccgcctca 228  Q
    ||||| || ||| | |||||||  |||||||||||| | |||| |||||||||||||||||||||    
T  27763863 cgcttatctcccacgttttcatcaaggaaaccgctgttttttgaattcaaattcttcccgcctca 27763927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16177343 - 16177451
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||||||||   |  ||| ||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||| ||||    
T  16177343 acattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtataggttatttgcgacccgttttccatatggaaaactaatatt 16177442  T
Q  100 tatacatag 108  Q
    |||||||||    
T  16177443 tatacatag 16177451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 17947935 - 17947827
Alignment:
Q  9 tataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||| |||| |||||| | |||||| |||| |||||||| ||||||||||||  |||||||||||| |||||||||||| ||||||| |||||    
T  17947935 tataactctttcctcttgcgccgttacttcgaatgttgtagaatttctataagtgatttttgacccattttccctatggaaaactaatatttatgcatag 17947836  T
Q  109 caaaataac 117  Q
     | ||||||    
T  17947835 aataataac 17947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 18713789 - 18713948
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgaccca-----ttttccatatggaaaactac 95  Q
    |||||||||||||||||||||||||| | |||| ||| ||||||| |||||||| || |||| ||| |||||| |     |||||| |||||||||||||    
T  18713789 acattctgtataactcttttctctcgtgacggtactttgagtgttatagaatttcta-aagttattagcgacctaacctattttccctatggaaaactac 18713887  T
Q  96 tatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccatt 156  Q
    || ||||||||||||||||||||  |||||| |  |||| | | ||| |||||||||||||    
T  18713888 tacttatacatagcaaaataactagaaaaagcctaactccatgatcaacacttcttccatt 18713948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19723915 - 19723691
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| |||||||||||| | ||||||| ||||||||| |  |||||| | ||||   |||||||||||||||||||||||||||||||||| |    
T  19723915 acattatgtatgactcttttctctagacgccggttcttcgagtgct--agaattct-ataaacaatttgcgacccattttccatatggaaaactactaat 19723819  T
Q  100 tatacatagcaaaataactgaaaaaaggccta-ctcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgct 198  Q
    ||||||||  ||||| ||||||||||||   |  || ||| ||||||||||||||||  | |||| ||||||| ||  | |||||| | ||||||| ||     
T  19723818 tatacatattaaaatgactgaaaaaaggataatttccacgatcagcacttcttccatcga-aaactgcttgtcgcctacgttttcactaaggaaactgcc 19723720  T
Q  199 gctctttggattcaaattcttcccgcctca 228  Q
    ||| |||| ||||||||| |||||||||||    
T  19723719 gct-tttgaattcaaatttttcccgcctca 19723691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 16793390 - 16793452
Alignment:
Q  46 ttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16793390 ttagaatttctttaagtgatttgcgacttattttccatatggaaaactactatttatacatag 16793452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22397648 - 22397545
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtg-ttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactat 98  Q
    ||||||| ||| ||| ||||||||||||||||| ||||||||| |||||||||| | |||| |||||||||||||| |||||| || ||||||||  |||    
T  22397648 acattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgatttgcgacccgttttccctacggaaaactcttat 22397549  T
Q  99 ttat 102  Q
    ||||    
T  22397548 ttat 22397545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 242075 - 241965
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| |||||||||||| | ||| ||| ||||||||| |  |||||| | ||||||||||||||||| ||||| |||||| ||||||||||||    
T  242075 acattatgtatgactcttttctctagacgctggtacttcgagtgct--agaattct-ataagtgatttgcgacctatttttcatatgaaaaactactatt 241979  T
Q  100 tatacatagcaaaa 113  Q
    |||| |||||||||    
T  241978 tatagatagcaaaa 241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 1177304 - 1177199
Alignment:
Q  3 attctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactattta 101  Q
    ||||| ||| |||||||||||||||||  || ||||||||||||||||||| | ||||  ||||||||| ||  |||||| |||| ||||||||||||||    
T  1177304 attctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgtatagatgatttgcgtcctgttttcc-tatgcaaaactactattta 1177206  T
Q  102 tacatag 108  Q
    |||||||    
T  1177205 tacatag 1177199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 15830073 - 15830169
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||||| | | | | ||| ||||||||||||||| | |||| | |||||||||||| |||||| |||| ||||||| |||||||||||||    
T  15830073 actcttttctctcacactgatactttgagtgttttagaattctgtataggcgatttgcgacccgttttccttatgcaaaactattatttatacatag 15830169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 31126229 - 31126133
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||||||||| |||  | | |||||||||||||||||||   |||| | |||||| ||||| |||||| || ||||||||| |||||||||||||    
T  31126229 actcttttctcttgcgttgttacttcgagtgttttagaattccatataggagatttgagacccgttttccctaaggaaaactattatttatacatag 31126133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 17352818 - 17352865
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttata 103  Q
    ||||||||||||||||||| |||||| || ||||||||||||| ||||    
T  17352818 tataagtgatttgcgaccctttttccttagggaaaactactatatata 17352865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 374204 - 374012
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaa 112  Q
    |||||||||||||||||| || ||| ||||||| ||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  374204 actcttttctctcgcgcctgtactttgagtgttgtagcatttctataagtgatttgcgaccg-ttttccctatggaaaactactatttatacatagcaaa 374106  T
Q  113 ataactgaaaaaaggcctactc-aacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgctcttt 205  Q
    ||||||||||||| ||  | ||  ||| ||||||||||||||||  ||| ||||||||||| ||| | ||| |||||||||||||||| ||||||    
T  374105 ataactgaaaaaa-gcaaaatctcacgatcagcacttcttccatgtagacaaccgcttgtctcccacgtttccattgaggaaaccgcttctcttt 374012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19924048 - 19923842
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    |||||||||||||||||||||||||||||| ||  ||| |||||  |||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||    
T  19924048 acattctgtataactcttttctctcgcgccagtaattcaagtgtggtagaatttctataagtggtttgcgacccattttccctatggaaaactactagtt 19923949  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    ||||||||||||||||||  ||||||    |||| ||| | ||||||| |||||||  || ||||||||||  ||| | ||| |||| |||||||||||     
T  19923948 atacatagcaaaataactagaaaaagcataactccacgattagcacttattccatttggacaaccgcttgtgtcccacgtttccatttaggaaaccgctt 19923849  T
Q  200 ctctttg 206  Q
    |||||||    
T  19923848 ctctttg 19923842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19926775 - 19926569
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||||||||||| |||||||||||||| ||  ||| |||||  |||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||    
T  19926775 acattctgtataactattttctctcgcgccagtaattcaagtgtggtagaatttctataagtggtttgcgacccattttccctatggaaaactactagtt 19926676  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    ||||||||||||||||||  |||||| |  |||| ||| | ||||||| |||||||  || ||||||||||  ||| | ||| |||| |||||||||||     
T  19926675 atacatagcaaaataactagaaaaagcctaactccacgattagcacttattccatttggacaaccgcttgtgtcccacgtttccatttaggaaaccgctt 19926576  T
Q  200 ctctttg 206  Q
    |||||||    
T  19926575 ctctttg 19926569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17167353 - 17167229
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||| ||||||||||||||||| ||| ||||  ||||| |||||||| ||||||||||||| ||||| ||||||  |||||||||||||||||    
T  17167353 acattttgtattactcttttctctcgcgctggtacttctggtgttgtagaatttctataagtgatttgggacccgttttccccatggaaaactactattt 17167254  T
Q  101 atacatagcaaaataactgaaaaaa 125  Q
    ||||||||||||||||||| |||||    
T  17167253 atacatagcaaaataactggaaaaa 17167229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 24878443 - 24878590
Alignment:
Q  8 gtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    ||||||||||||||||||||| ||||  |||||||||| |||||||| ||||||||||||| |||| |||||  | |||||| |||||||||||||||||    
T  24878443 gtataactcttttctctcgcgtcggtaattcgagtgttgtagaatttctataagtgatttgagacctattttatagatggaacactactatttatacata 24878542  T
Q  108 gcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat 155  Q
    |||||||||| ||| ||||  | |||| ||  ||| ||||||||||||    
T  24878543 gcaaaataacagaagaaagctcaactccacaatcatcacttcttccat 24878590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 25667266 - 25667092
Alignment:
Q  46 ttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagca 145  Q
    ||||||||| ||||| ||||| | || ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||  |||  | | ||| ||    
T  25667266 ttagaatttctataaatgattcgggatccatttttcatatggaaaactactatttatacatagtaaaataactgaaaaaaggctaacttcatgatcaaca 25667167  T
Q  146 cttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctgctctttggattcaaattcttc 220  Q
    || |||||||  |||||  ||||||| ||| | |||||||  || ||||||||  |||||| |||||||||||||    
T  25667166 ctccttccatcgagaaatggcttgtctcccacgttttcatcaagaaaaccgctattctttgaattcaaattcttc 25667092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 16375179 - 16375251
Alignment:
Q  52 tttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaa 124  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  16375179 tttttataggtgatttgcgacccatttttcatttggaaaactactatttatacatagcaaaataactgaaaaa 16375251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23379466 - 23379358
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaattttt-ataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||||||  || ||||||||||||||||||| |  ||| |||||||||||||| |||||| |||||||||||||||||    
T  23379466 acattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaactactatt 23379367  T
Q  100 tatacatag 108  Q
    |||||||||    
T  23379366 tatacatag 23379358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19218073 - 19217967
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||| |||  |||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||| |||||| ||||||||||   |||||    
T  19218073 acattctttatggctcttttctctcgcgccggtactttgagtgttttagaatttgtataggtgatttgcgacccgttttccctatggaaaacagttattt 19217974  T
Q  101 atacata 107  Q
    |||||||    
T  19217973 atacata 19217967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 31533073 - 31532945
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaa---actact 96  Q
    ||||||| ||| |||||||||| | | ||||||| ||||||||| |  |||||| | ||||||||||||||||| ||||||||||||||||   ||||||    
T  31533073 acattctctatgactcttttctttagacgccggtacttcgagtgct--agaattct-ataagtgatttgcgacctattttccatatggaaaagtactact 31532977  T
Q  97 atttatacatagcaaaataactgaaaaaaggc 128  Q
    ||||||| |||| |||||||||||||||||||    
T  31532976 atttatatatagtaaaataactgaaaaaaggc 31532945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 20064548 - 20064448
Alignment:
Q  9 tataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    |||||||||||||||| || ||||| |||  |||||||||||||| | |||| | |||||||||||| |||||| |||||||||||| ||||||||||||    
T  20064548 tataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgacccgttttccctatggaaaactattatttatacata 20064449  T
Q  108 g 108  Q
    |    
T  20064448 g 20064448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20713267 - 20713375
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||| ||  ||||  |||||||||||||||||| | |||| | |||||||||||| |||||| |||||||||||| ||||    
T  20713267 acattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatatgcgatttgcgacccgttttccctatggaaaactattatt 20713366  T
Q  100 tatacatag 108  Q
    |||||||||    
T  20713367 tatacatag 20713375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 23210189 - 23210093
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||||||||| |||||||| ||||||||||||||||||| | ||||   |||||||||||  |||||| ||||| |||||| |||||||||||||    
T  23210189 actcttttctcttgcgccggtacttcgagtgttttagaattatgtatatacgatttgcgacctgttttccctatgggaaactattatttatacatag 23210093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 24663677 - 24663729
Alignment:
Q  64 atttgcgacccattttccatatggaaaactactatttatacatagcaaaataa 116  Q
    |||||||||||||||| |||||||||||||||||||  ||||||| |||||||    
T  24663677 atttgcgacccatttttcatatggaaaactactattagtacatagtaaaataa 24663729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 28619292 - 28619224
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaag 126  Q
    |||||||||||||||||||||||| | |||| ||||||   |||||||||||| |||||||||| ||||||    
T  28619292 tataagtgatttgcgacccatttttcttatgaaaaact--catttatacatagaaaaataactgtaaaaag 28619224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25951354 - 25951459
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||  | |||| ||| ||||||||||||||| | |||||| ||||| |||||  |||| | |||||||||||| ||||    
T  25951354 acattctttatgactcttttctctct-gtcggtactttgagtgttttagaattatgtataagcgatttacgacctgttttacctatggaaaactattatt 25951452  T
Q  100 tatacat 106  Q
    |||||||    
T  25951453 tatacat 25951459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 21165300 - 21165344
Alignment:
Q  63 gatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||    
T  21165300 gatttgcgacccgttttccctatggaaaactattatttatacata 21165344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 22969454 - 22969413
Alignment:
Q  41 gtgttttagaatttttataagtgatttgcgacccattttcca 82  Q
    ||||| |||||||| ||||| |||||||||||||||||||||    
T  22969454 gtgttgtagaatttctataaatgatttgcgacccattttcca 22969413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 23355785 - 23355898
Alignment:
Q  86 ggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttca 184  Q
    |||||||||||||||||| |||  ||||| |||| |||||  |  |||| ||| ||| ||||||||||||  ||| ||||| ||||| ||| | ||| ||    
T  23355785 ggaaaactactatttataaataataaaattactggaaaaaacctaactccacgatcatcacttcttccatgtagacaaccgtttgtctcccacgtttgca 23355884  T
Q  185 ttgaggaaaccgct 198  Q
    ||||||||||||||    
T  23355885 ttgaggaaaccgct 23355898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 36499547 - 36499483
Alignment:
Q  43 gttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||| | ||||||||||| ||||| |||||  ||||| ||||||| |||||||||||||    
T  36499547 gttttagaattct-ataagtgatttacgacctattttttatatgaaaaactattatttatacatag 36499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 20060911 - 20061007
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||||||||| ||||||||  ||| | |||||||||||| | |||| | ||||||| |||| | | || ||||||||||||  ||||||||||||    
T  20060911 actcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgcaacccgtctaccctatggaaaactatcatttatacatag 20061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26010962 - 26011167
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||   |||| |||||||||||||  |||||| |||||||||||||||||    
T  26010962 acattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgacctgttttccctatggaaaactactatt 26011061  T
Q  100 tatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaagaaaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    ||||||||| |||||||||| |||||||  || ||     ||| |||||| || ||  ||||||| |||||| ||| | ||||||||||||||||||||     
T  26011062 tatacataggaaaataactggaaaaagg-ataatcccaaatcaacacttcctctatgtagaaaccacttgtctcccacgttttcattgaggaaaccgctt 26011160  T
Q  200 ctctttg 206  Q
    |||||||    
T  26011161 ctctttg 26011167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 23378563 - 23378679
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| ||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||| |||||||| |||| ||||||||||||    
T  23378563 acattatgtatgactcttttctctcgcgccgatacttcgagtattttagaattttgtataagtgatttgtgacacattttccctatgtaaaactactatt 23378662  T
Q  100 tatacatagcaaaataa 116  Q
    |||||||||||||||||    
T  23378663 tatacatagcaaaataa 23378679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 15759663 - 15759779
Alignment:
Q  13 actcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatgga-aaactactatttatacatagca 110  Q
    |||||||||||| | ||||||| |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |    
T  15759663 actcttttctctagacgccggtacttctagtgttt-agaatttctataaatgatttgcgacccattttccatatgaataaactactatttatacatagta 15759761  T
Q  111 aaataactgaaaaaaggc 128  Q
    ||||||||||||||||||    
T  15759762 aaataactgaaaaaaggc 15759779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 4832597 - 4832492
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaa 111  Q
    ||||||||||||| | ||  ||||||||||||||||||||| | |||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||    
T  4832597 actcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttgcgatccattttccctatggaaaactactatttatacataggaa 4832498  T
Q  112 aataac 117  Q
    ||||||    
T  4832497 aataac 4832492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 24699140 - 24699032
Alignment:
Q  15 tcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaa 113  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||| | |||||||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  24699140 tcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgacccgttttccctatggaaaactattatttatacatag-aaaa 24699042  T
Q  114 taactgaaaa 123  Q
    |||| |||||    
T  24699041 taacggaaaa 24699032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 13428803 - 13428679
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||| ||| ||||||||||||| || |||| ||||||||||||||||||| | ||| ||||||||||||   ||| || ||||||||||||||||||    
T  13428803 acattctttattactcttttctctcacgtcggtacttcgagtgttttagaattat-ataggtgatttgcgacatgtttcccctatggaaaactactattt 13428705  T
Q  101 atacatagcaaaataactgaaaaaag 126  Q
    |||||||| ||||||| || ||||||    
T  13428704 atacatagtaaaataaatggaaaaag 13428679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 4765780 - 4765665
Alignment:
Q  3 attctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactattta 101  Q
    ||||| ||| |||||||||||||||||  || | || |||||||||||||  | |||| ||||||||||||||||||| | |||||||||||||||||||    
T  4765780 attctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgatttgcgacccatttttcctatggaaaactactattta 4765681  T
Q  102 tacatagcaaaataact 118  Q
    ||||||| |||||||||    
T  4765680 tacatag-aaaataact 4765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 16243030 - 16242858
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| ||||||||||||||||  ||| ||||||||||||||||||  | || | |  |||| |||| | |||||| |||||||||||||||||    
T  16243030 acattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcctgtagaggaaatttacgactcgttttccctatggaaaactactatt 16242931  T
Q  100 tatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat-taagaaaccgcttgtc 171  Q
    ||| | |||||||||||||| |||||| |  |||| ||| ||| |||||||||||| |||  |||||||||||    
T  16242930 tattcgtagcaaaataactggaaaaagcctaactccacgatcaacacttcttccatgtaaacaaccgcttgtc 16242858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 8737214 - 8737019
Alignment:
Q  35 cttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactc 134  Q
    |||| |||||| |||||||| |||| ||||||||| |||| |||| | | ||||||||||||||||||||||||||||||||||  |||||| |  ||||    
T  8737214 cttcaagtgttgtagaatttctatatgtgatttgcaacccgtttttcctgtggaaaactactatttatacatagcaaaataacttgaaaaagcctaactc 8737115  T
Q  135 aacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgctctttg-gattcaaattcttcccgcctca 228  Q
     |||  || |||||||||||||  || ||  ||||||| ||| | ||| || | ||||||||| | |||||||  ||||||| |||||||||||||    
T  8737114 cacgaacaccacttcttccatttggacaaatgcttgtctcccacgtttccaataaggaaaccgtttctctttgaaattcaaaatcttcccgcctca 8737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4769845 - 4769970
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||| |||| |||  |||||||||||||||||| | ||||  ||||||| ||| | |||||| |||||||||||||||||    
T  4769845 acattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttgggacgc-ttttccctatggaaaactactatt 4769943  T
Q  100 tatacatagcaaaataactgaaaaaag 126  Q
    ||||||||  ||||||| || ||||||    
T  4769944 tatacataagaaaataaatggaaaaag 4769970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 9089452 - 9089260
Alignment:
Q  35 cttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactc 134  Q
    |||| |||||| |||||||| ||||||||||||| ||||| |||||| | ||||||   ||||||||||||||||||| |||||  ||| || |  ||||    
T  9089452 cttcaagtgttgtagaatttctataagtgatttgtgacccgttttccctttggaaa---actatttatacatagcaaactaactagaaatagcctaactc 9089356  T
Q  135 aacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgctctttg-gattcaaattcttcccgcctca 228  Q
     ||| ||| |||||||||||||  || ||  ||||||| ||| | ||| || | ||||||||| | |||||||  ||||||| |||||||||||||    
T  9089355 cacgatcaacacttcttccatttggacaaatgcttgtctcccacgtttccaataaggaaaccgtttctctttgaaattcaaaatcttcccgcctca 9089260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 26013741 - 26013889
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccat 155  Q
    |||| |||||||| ||||| |||||| ||||||||   ||||||||||||||||||| |||||  ||| || |  |||| ||| ||| ||||||||||||    
T  26013741 tataggtgatttgtgacccgttttccctatggaaa---actatttatacatagcaaactaactagaaatagcctaactccacgatcaacacttcttccat 26013837  T
Q  156 taaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgctctttg 206  Q
       || ||| ||||||| |||   |||||||||||||||||||| |||||||    
T  26013838 gttgacaactgcttgtctcccatgttttcattgaggaaaccgcttctctttg 26013889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 29614676 - 29614580
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgtt-ttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||||||||| | | |||| ||||||||||| |||||||| | |||| | ||||||||||||||||||| |||||||||||| | |||||||||||    
T  29614676 actcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggcgatttgcgacccattttccctatggaaaacta-tttttatacatag 29614580  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7148829 - 7148937
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttt-tataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||||| |||| |||| | | |||||||||| | |||| |  ||||| |||||  ||| | |||||||||||||||||    
T  7148829 acattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtataggcaatttgtgacccggttttcctatggaaaactactatt 7148928  T
Q  100 tatacatag 108  Q
    |||||||||    
T  7148929 tatacatag 7148937  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27718003 - 27717893
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    |||||||||||||||||||  |||   ||||||| ||||||||| |  |||||| | |||||||||||| |||| ||||| |||||| ||||||| ||||    
T  27718003 acattctgtataactctttcttctaaacgccggtacttcgagtgct--agaattct-ataagtgatttgggacctatttttcatatgaaaaactaatatt 27717907  T
Q  100 tatacatagcaaaa 113  Q
    ||||||||| ||||    
T  27717906 tatacatagtaaaa 27717893  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 14132097 - 14132040
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaa 113  Q
    |||||||||||||| |||  |||||| |||| ||||||||||||||||||||| ||||    
T  14132097 tataagtgatttgcaacctcttttccgtatgaaaaactactatttatacatagtaaaa 14132040  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 15687001 - 15687108
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagt-gttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatttatacatagca 110  Q
    |||||||||||||||| |||| ||||||||  ||||||||||   |||| |||||||||||| | ||| |  |||||||||||  ||||||||||||| |    
T  15687001 actcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttgcgactcgtttccactatggaaaactcttatttatacatag-a 15687099  T
Q  111 aaataactg 119  Q
    |||||||||    
T  15687100 aaataactg 15687108  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16226736 - 16226655
Alignment:
Q  1 acattctgtataactcttttctctc-gcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttcc 81  Q
    |||||||||||||||| |||| ||  |||| |||  || ||||||| |||||||| ||||| ||||||| ||||||||||||    
T  16226736 acattctgtataactcgtttccctatgcgctggtagtttgagtgttgtagaatttctataaatgatttgtgacccattttcc 16226655  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 9033558 - 9033467
Alignment:
Q  17 ttttctctcgcgccggtgcttcgagtgtttt-agaatttt-tataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    |||||||| |||||| | ||||||||||||| | |||| | |||| | ||| |||||||| |||||| |||||||||||| ||||||||||||    
T  9033558 ttttctcttgcgccgatacttcgagtgttttgaaaattctgtataggcgatatgcgacccgttttcc-tatggaaaactattatttatacata 9033467  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 45279904 - 45279852
Alignment:
Q  56 tataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    ||||||||||||| ||||| |||| | |||| ||||||||||| |||||||||    
T  45279904 tataagtgatttgtgacccttttttcttatgaaaaactactatatatacatag 45279852  T

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Target: scaffold0142 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 20621 - 20825
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||| | || | |||||||||||| |||||    
T  20621 acattatgtataactcttttctctcgcgccggtacttcgagtgttttagaagttctgtaagtgatttgcgacccgtcttgcctatggaaaactattattt 20720  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctg 199  Q
    |||||||| |||||||||  |||||| |  |||| | | ||||||||||||| |||   | ||| |||| || ||| | |||||||||||||||| |||     
T  20721 atacatag-aaaataactagaaaaagcctaactccaagatcagcacttcttcaatttgcacaactgcttctctcccacgttttcattgaggaaactgctt 20819  T
Q  200 ctcttt 205  Q
    ||||||    
T  20820 ctcttt 20825  T

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Target: scaffold0337 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17301 - 17492
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||||||||||| ||||| |||||| ||||||||   |||||||    
T  17301 acattctgtataactcttttctctcgcgccggtact-cgagtgttgtacaatttctataagtgatttgtgacccgttttccctatggaaa---actattt 17396  T
Q  101 atacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaacc 195  Q
    |||||||||||| |||||  ||| || |  |||| ||| ||| |||||||||||||  || |||||||| || ||| | ||| |||||||||||||    
T  17397 atacatagcaaactaactagaaatagcctaactccacgatcaacacttcttccatttggacaaccgcttatctcccacatttccattgaggaaacc 17492  T

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Target: scaffold0337; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 4627 - 4830
Alignment:
Q  2 cattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattta 101  Q
    |||||||||||||||||||||||||||||||| | || |||||| |||||||| ||||||||||||| ||||| |||||| | ||||||   ||||||||    
T  4627 cattctgtataactcttttctctcgcgccggtac-tcaagtgttgtagaatttctataagtgatttgtgacccgttttccctttggaaa---actattta 4722  T
Q  102 tacatagcaaaataactgaaaaaaggcctactcaacgttcagcacttcttccattaaga-aaccgcttgtcccccgctttttcattgaggaaaccgctgc 200  Q
    ||||||||||| |||||  ||| || |  |||| ||| ||| |||||||||||||  || |||||||| || ||| | ||| |||||||||||||  | |    
T  4723 tacatagcaaactaactagaaatagcctaactccacgatcaacacttcttccatttggacaaccgcttatctcccacatttccattgaggaaaccatttc 4822  T
Q  201 tctttgga 208  Q
    ||||||||    
T  4823 tctttgga 4830  T

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Target: scaffold0040 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26953 - 26829
Alignment:
Q  1 acattctgtataactcttttctctcg-cgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||| ||||| |||||||||||| | || |||| ||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  26953 acattatgtatgactcttttctctagacgacggtacttcgagtgctt-agaatttctataaatgatttgcgacccattttccatatggaaaactactatt 26855  T
Q  100 tatacatagcaaaataactgaaaaaa 125  Q
    ||||||||| ||||||||| ||||||    
T  26854 tatacatagtaaaataacttaaaaaa 26829  T

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Target: scaffold0024 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 38890 - 38806
Alignment:
Q  50 aatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctactc 134  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38890 aatttctataagtgatttgtgacctattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggccaactc 38806  T

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Target: scaffold0039 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 51619 - 51462
Alignment:
Q  63 gatttgcgacccattttccatatggaaaactactatttatacatagcaaaataactgaaaaaaggcctact-caacgttcagcacttcttccattaagaa 161  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |  | | | | | ||| ||||| ||||||  ||||    
T  51619 gatttacgacccattttccatatggaaaactactatttatacatagtaaagtaattgaaaaaagactaattgccatgatcaacacttattccatcgagaa 51520  T
Q  162 accgcttgtcccccgctttttcattgaggaaaccgctgctctttggattcaaattctt 219  Q
    | |||||||||||| | |||||||  |||||||| |||||||||||||||||||||||    
T  51519 atcgcttgtcccccacgttttcatcaaggaaaccactgctctttggattcaaattctt 51462  T

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Target: scaffold0016 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12999 - 13107
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaattttt-ataagtgatttgcgacccattttccatatggaaaactactatt 99  Q
    ||||||| ||| |||||||||||||||||  || ||||||||||||||||||| |  ||| |||||||||||||| |||||| |||||||||||||||||    
T  12999 acattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaactactatt 13098  T
Q  100 tatacatag 108  Q
    |||||||||    
T  13099 tatacatag 13107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20922 - 21029
Alignment:
Q  1 acattctgtataactcttttctctcgcgccggtgcttcgagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactattt 100  Q
    ||||||| ||| |||||||||||||| |   || |||| |||||||||||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||    
T  20922 acattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattattatacgtgatttgcgacccattgtccctatggaagactactattt 21021  T
Q  101 atacatag 108  Q
    ||||||||    
T  21022 atacatag 21029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 6502 - 6562
Alignment:
Q  47 tagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    |||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  6502 tagaatttctataagtgatttgcgacctatttttcatatgaaaaactactatttatacata 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 10280 - 10221
Alignment:
Q  49 gaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacatag 108  Q
    |||||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  10280 gaatttctataagtgatttgcgacctatttttcatatgaaaaactactatttatacatag 10221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 5041 - 5092
Alignment:
Q  75 attttccatatggaaaactactatttatacatagcaaaataactgaaaaaag 126  Q
    ||||||| |||||||||||||||||||||||||  |||||||||| ||||||    
T  5041 attttccctatggaaaactactatttatacataataaaataactggaaaaag 5092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5747 - 5647
Alignment:
Q  13 actcttttctctcgcgccggtgcttcgagtgttttagaatt-tttataagtgatttgcgacccattttccatatggaaaactactatttatacatagcaa 111  Q
    |||||||| ||||| | |||| |||| || ||||||||||| | |||| ||||||| |||||| |||||| ||| |||||||  |||||||||| |||||    
T  5747 actcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgacccgttttccctatagaaaactcttatttatacaaagcaa 5648  T
Q  112 a 112  Q
    |    
T  5647 a 5647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 50484 - 50552
Alignment:
Q  39 gagtgttttagaatttttataagtgatttgcgacccattttccatatggaaaactactatttatacata 107  Q
    ||||||| || || |||||||| ||||||||||||||||||||   | |||||||  ||||||||||||    
T  50484 gagtgttgtaaaaattttataaatgatttgcgacccattttccgacttgaaaactcttatttatacata 50552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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