View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4710-Insertion-1 (Length: 1001)
Name: NF4710-Insertion-1
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 95 - 661
Target Start/End: Complemental strand, 45304483 - 45303940
Alignment:
| Q |
95 |
tcattcatcatcatgcatgtatgtactaaaccagacaaataccatctctttttcctttacaactttgggttgggacattcctcccttaatcaatcaccaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45304483 |
tcattcatcatcatgcatgtatgtactaaaccagacaaataccatctctttttcctttacaactttgggttgggacattcctcccttaatcaatcaccaa |
45304384 |
T |
|
| Q |
195 |
aaagtcttttaaggaataataatcataaggatctttatccacccactaagcactgattatatgcatnnnnnnnnnnnnnnnttagataactagtaaaaag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45304383 |
aaagtcttttaaggaataataatcataaggatctttatccacccactaagcactgattatatgcatagagagagaga----ttagataactagtaaaaag |
45304288 |
T |
|
| Q |
295 |
tagtaacttatatgcagtaatgcacaaagtaactaggtataggggaaagtaagaaaggaccatagtatagtaggtaagaaaagaaaagaaaaggtttcgt |
394 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
45304287 |
tagtaacttatatgcagcaatgcacaaagtaactaggtataggggaaagtaagaaaggaccat-----agtaggt-----aagaaaagaaaaggtttcgt |
45304198 |
T |
|
| Q |
395 |
tgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattacttcctttctgtcggggctgctgttatgaaacttagctgggcttttggggc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45304197 |
tgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattccttcctttctgtcggggctgctgttatgaaacttagctgggcttttggggc |
45304098 |
T |
|
| Q |
495 |
ttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttctatgaaatgaaatgaaattgagagaccaccaaa |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
45304097 |
ttgtgcatattcattcaagtcaagtcagtagcttttgggcactcccccattccattattcttctttct-----atgaaatgaaatttagagaccacca-- |
45304005 |
T |
|
| Q |
595 |
acaaacaagacaaccctcaccttcacacctttgctttaatttgacttcacatagaccaacatccacc |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45304004 |
--aaacaagacaaccctcaccttcacacctttgctttaatttgacttcacatagaccaacatccacc |
45303940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 692 - 1001
Target Start/End: Complemental strand, 45303906 - 45303596
Alignment:
| Q |
692 |
gagtgcatgctcatttgaaatccgtgcatgccctatgttttagtttttgtgttgaggttaattaaattctttctttgtttctacagggaatctgtttcaa |
791 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45303906 |
gagtgcatgctcatttgaaattcgtgcatgccctatgttttagtttttgagttgaggttaattaaattctttctttgtttctacagg-aatctgtttcaa |
45303808 |
T |
|
| Q |
792 |
ttcaaaggtcagcagcagca---aaagcagatggatggctccaattcgatgaagcagaattacagcaaagaaaaaactttatggaaaggaatgccacggt |
888 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
45303807 |
ttcaaaggtcagcagcagcagcaaaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccac-gt |
45303709 |
T |
|
| Q |
889 |
ggcatatgatgcagttaacttctttcgttgtcctacagctagcatggtccaccac-accacggtaac-actagacttatggaccc-aaactcatcaggac |
985 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
45303708 |
ggcatatgatgcagttaacttctt--cttgtcctacagctagcat-gtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagac |
45303612 |
T |
|
| Q |
986 |
ccatgaactcacctta |
1001 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
45303611 |
ccatgaactcaactta |
45303596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 45304581 - 45304522
Alignment:
| Q |
7 |
aaaaactggctaccatctacaaattccagtaccagtactcttcctcttgcagaggtctat |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45304581 |
aaaaactggctaccatctacaaattccagtaccagtactcttcatcttgcagaggtctat |
45304522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 816 - 909
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
816 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaaaaaactttatggaaaggaatgccacggtggcatatgatgcagttaactt |
909 |
Q |
| |
|
||||| || |||||||||| |||||||| ||| |||||||| || |||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtca-tgtggcatatgatgctgttaactt |
45150590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University