View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-10 (Length: 359)
Name: NF4710-Insertion-10
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 28269643 - 28269296
Alignment:
| Q |
8 |
caacttgggattcacgacaaaccggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctgttactagtttaac |
107 |
Q |
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| T |
28269643 |
caacttgggattcacgacaaaccggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctattactagtttaac |
28269544 |
T |
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| Q |
108 |
tagatttgacattccacaactcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatt |
207 |
Q |
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| T |
28269543 |
tagatttgacattccacaactcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatt |
28269444 |
T |
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| Q |
208 |
tatcagtccaaatgcgcgccacataattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaaaatcaaagtgtttgtatatgcaatca |
307 |
Q |
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| T |
28269443 |
tatcagtccaaatgcgcgccacataattgtatcagcacctacatcaaaagagttggtgaagaaattggaggtaaaatcaaag----tgtatatgcaatca |
28269348 |
T |
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| Q |
308 |
cattttcttctgcagaattaagaaacaaattatttatagttattatgtttga |
359 |
Q |
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| T |
28269347 |
cattttcttctgcagaattaagaaacaaattatttatagttattatgtttga |
28269296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 281
Target Start/End: Original strand, 79255 - 79404
Alignment:
| Q |
132 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
231 |
Q |
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| T |
79255 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
79354 |
T |
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| Q |
232 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
281 |
Q |
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| T |
79355 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
79404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 281
Target Start/End: Complemental strand, 40887029 - 40886880
Alignment:
| Q |
132 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
231 |
Q |
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| T |
40887029 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
40886930 |
T |
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| Q |
232 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
281 |
Q |
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| T |
40886929 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
40886880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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