View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4710-Insertion-11 (Length: 212)

Name: NF4710-Insertion-11
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4710-Insertion-11
NF4710-Insertion-11
[»] chr6 (5 HSPs)
chr6 (48-212)||(21150514-21150679)
chr6 (25-200)||(33714157-33714331)
chr6 (104-189)||(23897174-23897260)
chr6 (55-105)||(33726328-33726378)
chr6 (48-105)||(21241757-21241817)
[»] scaffold0510 (1 HSPs)
scaffold0510 (104-189)||(780-866)
[»] scaffold0016 (1 HSPs)
scaffold0016 (125-179)||(64919-64973)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 21150679 - 21150514
Alignment:
Q  48 agaaacattctctttgacagactcattatttgtagaggtagtggtaacatcaacatcacaatattagtctcataacc-aaaatgaactcacccttattag 146  Q
    |||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  21150679 agaagcattctctttgacaggctcattatttgtagaggcagtggtaacatcaacatcacaatattagtcccataaccaaaaatcaactcacccttattag 21150580  T
Q  147 tggaagataggacatgttctagtgagtatttggatttgcgtctacctcatattttttgtgtcctga 212  Q
    | |  ||| | |||||||||||||||||||||||||||| ||| ||||| |||| | |||||||||    
T  21150579 ttgttgattgaacatgttctagtgagtatttggatttgcatctgcctcacatttctcgtgtcctga 21150514  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 33714331 - 33714157
Alignment:
Q  25 tctttaattccttttggaggagaagaaacattctctttgacagactcattatttgtagaggtagtggtaacatcaacatcacaatattagtc---tcata 121  Q
    ||||| |||||||| |||| |  |||| ||||||||||||||| ||||||||||||||||||||| ||      ||||||||||||||||||   |||||    
T  33714331 tcttttattcctttgggagaaagagaagcattctctttgacaggctcattatttgtagaggtagttgt------aacatcacaatattagtctcatcata 33714238  T
Q  122 acc--aaaatgaactcacccttattagtggaagataggacatgttctagtgagtatttggatttgcgtctacctcatattt 200  Q
    |||  ||||  ||||||||||||||||||| |||| | ||||||| | |||||||||||||| ||||||| ||||| ||||    
T  33714237 accaaaaaaaaaactcacccttattagtggtagattgaacatgttttggtgagtatttggatatgcgtctgcctcacattt 33714157  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 23897260 - 23897174
Alignment:
Q  104 cacaatattagtctcataaccaa-aatgaactcacccttattagtggaagataggacatgttctagtgagtatttggatttgcgtct 189  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||| |||| | |||||||  |   |||||||||||||||||||    
T  23897260 cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtct 23897174  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 33726378 - 33726328
Alignment:
Q  55 ttctctttgacagactcattatttgtagaggtagtggtaacatcaacatca 105  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  33726378 ttctctttgacgggctcattatttggagaggtagtggtaacatcaacatca 33726328  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 21241757 - 21241817
Alignment:
Q  48 agaaacattctctttgacagactcattatttgtagaggta---gtggtaacatcaacatca 105  Q
    |||| |||||||||||||||| |||| ||||| |||||||   ||||||||||||||||||    
T  21241757 agaagcattctctttgacagagtcataatttgcagaggtagtggtggtaacatcaacatca 21241817  T

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Target: scaffold0510 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 780 - 866
Alignment:
Q  104 cacaatattagtctcataaccaa-aatgaactcacccttattagtggaagataggacatgttctagtgagtatttggatttgcgtct 189  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||| |||| | |||||||  |   |||||||||||||||||||    
T  780 cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtct 866  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 64919 - 64973
Alignment:
Q  125 aaaatgaactcacccttattagtggaagataggacatgttctagtgagtatttgg 179  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  64919 aaaataaactcacccttattagtggtagatagaacatgttttagtgagtatttgg 64973  T

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