View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-12 (Length: 96)
Name: NF4710-Insertion-12
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-12 |
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| [»] scaffold0112 (3 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0759 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0112 (Bit Score: 58; Significance: 6e-25; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 25844 - 25783
Alignment:
| Q |
35 |
gatgacctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
96 |
Q |
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| T |
25844 |
gatggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
25783 |
T |
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Target: scaffold0112; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 40894 - 40838
Alignment:
| Q |
40 |
cctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
96 |
Q |
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| T |
40894 |
cctctaactctaatgaaaaagactacttgaagatggctttggaaattgccacttaag |
40838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 40998 - 40943
Alignment:
| Q |
21 |
ttgactatacgggcgatgacctctaactctaatgaaaaggagtacttgaagatggc |
76 |
Q |
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| T |
40998 |
ttgactataggggtgatggcctctaattctaatgaaatggagtacttgaagatggc |
40943 |
T |
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Target: scaffold0416 (Bit Score: 56; Significance: 9e-24; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 56; E-Value: 9e-24
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 7376 - 7297
Alignment:
| Q |
17 |
tgcattgactatacgggcgatgacctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
96 |
Q |
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| T |
7376 |
tgcattgactatacgggtgatggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccacttaag |
7297 |
T |
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Target: scaffold0759 (Bit Score: 53; Significance: 5e-22; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 2410 - 2498
Alignment:
| Q |
8 |
ggaatgaggtgcattgactatacgggcgatgacctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
96 |
Q |
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| T |
2410 |
ggaatgatctgcattgactatacgggtgatggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccacttaag |
2498 |
T |
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Target: chr5 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 26792252 - 26792331
Alignment:
| Q |
17 |
tgcattgactatacgggcgatgacctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaag |
96 |
Q |
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| T |
26792252 |
tgcattgactatacgggtgatggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccacttaag |
26792331 |
T |
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