View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-13 (Length: 981)
Name: NF4710-Insertion-13
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 692; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 8 - 797
Target Start/End: Complemental strand, 41735722 - 41734937
Alignment:
| Q |
8 |
tgaggtgcatgatgacctggcttaccacaaaggcgggcatagtaacacgaggaacataattgtcgcatggtatgtgatcttacctcttttgttaagcctt |
107 |
Q |
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| T |
41735722 |
tgaggtgcatgatgacctggcttaccacaaaggcggccatagtaacacgaggaacataattgtcgcatggtatgtgatcttacctcttttgttaagcctt |
41735623 |
T |
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| Q |
108 |
ttttgtgataagatttatcaatggtgattacttctgtttcaactgattcttgtaatcctttcatgatccatgtaactcctcagtgagggttcgacaacaa |
207 |
Q |
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| T |
41735622 |
ttttgtgataagatttatcaatggtgattacttctgtttcaactgattcttgtaatcctttcatgatccatgtaacttctcagtgagggttcgacaacaa |
41735523 |
T |
|
| Q |
208 |
aggcatatggtagaataatattttcgagctttctgttcttccaacagcttgcagtactcgttggtttgcaacttgatatattaaacttcagtcatatatc |
307 |
Q |
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| T |
41735522 |
aggcatatggtagaataatattttcg-gctttctgttcttccaacagcttgcagtactcgttggtttgcaacttgatatattaaacttcattcatatatc |
41735424 |
T |
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| Q |
308 |
aaaggtatagtaattacccatgataaattatttgttttttgacatacatcttcaaagtgtacttggaaatcatcgaatccccatatgtcatttccttcct |
407 |
Q |
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| T |
41735423 |
aaaggtatagtaattacccatgataaattatttgttttttgacatacatcttcaaagtgtacttggaaatcatcgaatccccatatgtcatttccttcct |
41735324 |
T |
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| Q |
408 |
tataagcgtaaaacaggtcgctagaaaatctactaagaattgtgtagggttagattgataagaaaatcatgtgttcaactccnnnnnnncaaggatgtgt |
507 |
Q |
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| T |
41735323 |
tataagcgtaaaacaggtcgctagaaaatctactaagaattgtgtagggttagattgataagaaaatcatgtgttcaactcctttttttcaaggatgtgt |
41735224 |
T |
|
| Q |
508 |
tcaactccattaacaaacatttgtcattaaaataaataaattattgtttggagaccgatttattttgtaagcgtagtttaaatgaaatggttgcttataa |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41735223 |
tcaactccattaacaaacatttgtcattaaaataaataaattattgtttggagaccgatttattttgtaagcgtagttt-aatgaaatggttgcttataa |
41735125 |
T |
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| Q |
608 |
tcttcgctaaggaaaccatatataatgccaaatattatcatttttatgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccat |
707 |
Q |
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| T |
41735124 |
tcttcgctaaggaaaccatatataatgccaaatattatcatttttatgttggcataccattgatcctttaaatttttaatgaaatgaatttctttgccat |
41735025 |
T |
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| Q |
708 |
tatnnnnnnncattgaaagtgatataaaaagggaagatatatgacatcatttttctgcgacgaattttaggaggggcagacgtggatgaa |
797 |
Q |
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| T |
41735024 |
tataaaaatacattgaaagtgatataaaaaggg-agatatatgacatca-ttgtctgcgacgaatttagggaggggcagacgtggatgaa |
41734937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 796 - 977
Target Start/End: Complemental strand, 41734293 - 41734113
Alignment:
| Q |
796 |
aaattatgtttgcaactatccgnnnnnnnnatcattaggtgaattttttggtcgaatttagtctagctataaacaattaacctttttaaaacaaataatg |
895 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
41734293 |
aaattatgtttgcaactatccgtttttt--atcattaggtgaattttttggtcgaatttagtctagttataaacaatttacttttttaaaacaaataagt |
41734196 |
T |
|
| Q |
896 |
tggatgttcgaggttcaaaacctgattcctacatatattatatattatgcaatatccttacc-attaagttaagctcacaaaa |
977 |
Q |
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|| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
41734195 |
ggggtgtccgaggttcaaaacccgattcctatatatattatatattatgcaatatccctaccaattaagttaagctcacaaaa |
41734113 |
T |
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