View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-14 (Length: 590)
Name: NF4710-Insertion-14
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 42094629 - 42094047
Alignment:
| Q |
8 |
gctcctgcgccaagtgctgccgacattcatgctccatcaccaagtccaacaaccaatcatgctccggtaccaagtcctaccgacaatcatgctccgacac |
107 |
Q |
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| T |
42094629 |
gctcctgcgccaagtcctgccgacattcatgctccatcaccaagtccaacaaccaatcatgctccggtaccaagtcctaccgacaatcatgcttcgacac |
42094530 |
T |
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| Q |
108 |
caaatccaagtggcaatcatgctccagcaccaagtgctaccgatatccaagtgtcaccgacaccaagtgccacccataaaaagcgccatcgacgtcggca |
207 |
Q |
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| T |
42094529 |
caaatccaagtggcaatcatgctccagcaccaagtgctaccaatatccaagtgtcaccgacaccaagtgccacccataaaaagtgccatcgacgtcggca |
42094430 |
T |
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| Q |
208 |
ctagggtctatgttttggctccaagtgccaccgggattcatgctctgacattgcgccatctcctggtcattcgggctctacaaggttgagtggttctgtt |
307 |
Q |
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| T |
42094429 |
ctggggtctctgttttggctccaagtgccaccgggattcatgctctgacattgcgccatctcctggtcattcgggctctacaaggttgagtggttctgtt |
42094330 |
T |
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| Q |
308 |
ggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgttagttttcggacatttcatatgttgttactttcctttttcttgtcgt |
407 |
Q |
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| T |
42094329 |
ggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgttagttttcggaca-ttcatatgttgttactttcctttttcttgtcgt |
42094231 |
T |
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| Q |
408 |
tgta-ttggtcttgctcgtagttcatggtgccttctaaaataaaacattttattttagttgttgattttgtggaatataattaactattacactgaaatt |
506 |
Q |
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| T |
42094230 |
tgtatttggtcttgttcgtagttcatggtgccttctaaaataaaacattttattttagttgttgattttgtggaatataattaactattacactgaaatt |
42094131 |
T |
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| Q |
507 |
ttcgctatttatttattttaactattaattatcaaatatatttccattnnnnnnnnctatttgaagaggaatgagttaatgtaa |
590 |
Q |
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| T |
42094130 |
ttcgctatttatttattttaactattaattatcaaatatatttccattaaaaaaaaccatttgaagaggaatgagttaatgtaa |
42094047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 263 - 369
Target Start/End: Complemental strand, 38710742 - 38710636
Alignment:
| Q |
263 |
ccatctcctggtcattcgggctctacaaggttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgtta |
362 |
Q |
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| T |
38710742 |
ccatctcctggtcattcgggttctaggaggttgagtggttttgttggtgtgagtgttgtggtggctttggtcttaggaagctttgctttttagaatgtta |
38710643 |
T |
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| Q |
363 |
gttttcg |
369 |
Q |
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| T |
38710642 |
attttcg |
38710636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 52798796 - 52798887
Alignment:
| Q |
275 |
cattcgggctctacaaggttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgttagttt |
366 |
Q |
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| T |
52798796 |
cattcgggttctaccaggttgagtggttctgatggtgttagtgttgtggtggctttggtcttaggaacctttgctttttagaatgttcgttt |
52798887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 52760887 - 52760819
Alignment:
| Q |
293 |
ttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgtt |
361 |
Q |
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| T |
52760887 |
ttgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgtt |
52760819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 52796908 - 52796987
Alignment:
| Q |
277 |
ttcgggctctacaaggttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttaga |
356 |
Q |
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| T |
52796908 |
ttcgggttctgcgaggatgagtgggtctgttggggtcagtgttgtggtggcttttgtcttaggaagctttgctatttaga |
52796987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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