View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4710-Insertion-16 (Length: 997)
Name: NF4710-Insertion-16
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-16 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 436 - 849
Target Start/End: Original strand, 34356628 - 34357038
Alignment:
| Q |
436 |
taataaaaagtaagaacaaacacttgactaagctacatatcctctaaattaaaattaaaaactaatccacgttaaaggaaattgtagagaattggaataa |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34356628 |
taataaaaagtaagaacaaacacttgactaagctacatatcctctaaattaaaattaaaaactaatccacgttaaaggaaattgtagag--ttggaataa |
34356725 |
T |
|
| Q |
536 |
gaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatgggtggtaaggattggggcatcccctgn |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
34356726 |
gaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatgggtggtaaggattgggacatcccctga |
34356825 |
T |
|
| Q |
636 |
nnnnnnnnnnnnnnnnnnncaatgaattttcataatagtaaataccaattgtagtccatacaaacagtttgtatctcgaatatattctgtaacaaatttt |
735 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34356826 |
aaaacacaaaaagaaaaaacaatgaattttcaaaatagtaaataccaattgtagtccatacaaacagtttgtatctcgaatatattctgtgacaaatttt |
34356925 |
T |
|
| Q |
736 |
aaacataaaattgatgactaattaatatatgctaatcctaattttataaatttaaggtacgatttatagactttctgggtaggtaaattaggggttttaa |
835 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34356926 |
aaacataaaattgatgactaattaatatatgccaatcctaattttataaatttaaggtacgatttatagactttctgggtaggtaaatta-gggttttaa |
34357024 |
T |
|
| Q |
836 |
agagtctttaattc |
849 |
Q |
| |
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|||||||||||||| |
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| T |
34357025 |
agagtctttaattc |
34357038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 34356351 - 34356631
Alignment:
| Q |
8 |
gtagagtgatatctcgcatggccatgagtgagtatacaaaattgtaaaatgtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356351 |
gtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcggtgagtctggaaatggttcgtcatccaagttgaggaagagttgtga |
34356450 |
T |
|
| Q |
108 |
gagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtgaatcaggtaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356451 |
gagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtgaatcaggtaga |
34356550 |
T |
|
| Q |
208 |
gcacttattttgtcttcccctaaaattgaacaacaagaatcacatcaaaaccaaattttatgtaaattttatcacggtaat |
288 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34356551 |
gcacttattttatcttcccctgaaattgaacaacaagaatcacatcaaaaccgaattttatgtaaattttatcacggtaat |
34356631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 35047388 - 35047128
Alignment:
| Q |
8 |
gtagagtgatatctcgcatggccatgagtgagtatacaaaattgtaaaatgtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047388 |
gtagagtgatatctcgcatggccatgagtgaatatccaaaattgcaaaaggtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtga |
35047289 |
T |
|
| Q |
108 |
gagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtgaatcaggtaga |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35047288 |
gagccaaagtggtctcgacctctttgagaggatacttgtggtggcggcatctttaatcgaaataaaggaaagaatataataaagaagtgaatcaggtagc |
35047189 |
T |
|
| Q |
208 |
gcacttattttgtcttcccctaaaattgaacaacaagaatcacatcaaaaccaaattttat |
268 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
35047188 |
gcacttattttgtcttctcctggaattgaacaaggagaatcacatcaaaaccaaattttat |
35047128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 514 - 633
Target Start/End: Complemental strand, 35046982 - 35046862
Alignment:
| Q |
514 |
aaattgtagagaattggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacg-tttaacacatgatgggtg |
612 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
35046982 |
aaattgtagagagttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcccgttttaacacatgatgggtg |
35046883 |
T |
|
| Q |
613 |
gtaaggattggggcatcccct |
633 |
Q |
| |
|
||||||||| | ||||||||| |
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|
| T |
35046882 |
gtaaggattagtgcatcccct |
35046862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 921 - 989
Target Start/End: Original strand, 34357111 - 34357181
Alignment:
| Q |
921 |
gctaaaccaaattagattgagtctaaaccgattac-agtcctatccaaact-aactagtgcacgaagaaac |
989 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
34357111 |
gctaaaccaaattagattgagtctaaaccgattacaagtcctatccaaactaaactagtgcacgaagaaac |
34357181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 3832 - 3981
Alignment:
| Q |
88 |
aagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataat |
187 |
Q |
| |
|
|||||||| | |||||||||||| | |||||| ||||||| |||||||||| |||| | ||| | ||||| || | || ||| |||||||| | || |
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|
| T |
3832 |
aagttgagtatgagttgtgagaggaagagtggtttccacctttttgagaggaccgttgttgcggcagtgtctttcattggaagaaaagaaagaatgtgat |
3931 |
T |
|
| Q |
188 |
aaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaa |
237 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |
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|
| T |
3932 |
aaagaagtgaatccggtagagcactgattctgtcttctcctggaattgaa |
3981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 4123 - 4221
Alignment:
| Q |
99 |
gagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtga |
197 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||| ||||| |||||| ||| || ||||| ||| || ||||||||||||| |||||||||||| |
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|
| T |
4123 |
gagttgtgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaatacgataaagaagtga |
4221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 5378 - 5527
Alignment:
| Q |
88 |
aagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataat |
187 |
Q |
| |
|
|||||||| | |||||||||||| | |||||| ||||||| |||||||||| |||| | ||| | ||||| || | || ||| |||||||| | || |
|
|
| T |
5378 |
aagttgagtatgagttgtgagaggaagagtggtttccacctttttgagaggaccgttgttgcggcagtgtctttcattggaagaaaagaaagaatgtgat |
5477 |
T |
|
| Q |
188 |
aaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaa |
237 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |
|
|
| T |
5478 |
aaagaagtgaatccggtagagcactgattctgtcttctcctggaattgaa |
5527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 5669 - 5767
Alignment:
| Q |
99 |
gagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtga |
197 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||| ||||| |||||| ||| || ||||| ||| || ||||||||||||| |||||||||||| |
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|
| T |
5669 |
gagttgtgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaatacgataaagaagtga |
5767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 49974083 - 49974236
Alignment:
| Q |
71 |
gaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaac |
170 |
Q |
| |
|
|||| |||| |||||| ||| ||||| ||||||||||||||| |||||| ||||| |||| ||||| || ||||||| ||| |||||| | | || |
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|
| T |
49974083 |
gaaagggttggtcatcgaagcggaggatgagttgtgagagccagagtggtttccacttcttcgagagaatgcttgtggcggcactgtctttagtagtaag |
49974182 |
T |
|
| Q |
171 |
aaaggaaagaatataataaagaagtgaatcaggtagagcacttattttgtcttc |
224 |
Q |
| |
|
||||||||||| || |||||||||||| || || | |||||| ||| ||||||| |
|
|
| T |
49974183 |
aaaggaaagaacatgataaagaagtgagtccggcaaagcactgattctgtcttc |
49974236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 557 - 608
Target Start/End: Original strand, 49761569 - 49761620
Alignment:
| Q |
557 |
ttcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatg |
608 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
49761569 |
ttcaagtttaccttggcttgaaaggagactttctcacgtttaacacatgatg |
49761620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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