View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-17 (Length: 606)
Name: NF4710-Insertion-17
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-17 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 36585134 - 36585441
Alignment:
| Q |
8 |
attttcatgtaaattctctaattttgatcaccatatatagattacttgtgcttgtgcattgtcaagtgaggattgttgtaatttttcttttatgtacccg |
107 |
Q |
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| T |
36585134 |
attttcatgtaaattctctaattttgatcaccata----gattacttgtgcttgtgcattgtcaagtgaggattgttgtaattttccttttatgtacccg |
36585229 |
T |
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| Q |
108 |
gattaagtatatcaacgagtttatttccctcgcaattacttctcgttatgaaaaattatgaagaaagtctcgtgtgtataacttagctaggaggaacagt |
207 |
Q |
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| T |
36585230 |
gattaagtatatcaacgagttaatttccctcgcaattacttctcgttatgaaaaattatgaagaaagtctcatgtgtataacttaactaggaggaacagt |
36585329 |
T |
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| Q |
208 |
gtattatatatgcatgagttggtttcatatgtttatctagaactgaaattttagctattgagtaacttgacaaatgagtgtgacaattaatgtaaatttc |
307 |
Q |
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| T |
36585330 |
atattatatatgcatgagttggatccacatgtttatctagagctgaaattttagctattaagttacttgagaaatgagtgtgacaattaatgtaaatttc |
36585429 |
T |
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| Q |
308 |
aatacaaagtta |
319 |
Q |
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| T |
36585430 |
aatactaagtta |
36585441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 379 - 606
Target Start/End: Original strand, 36585521 - 36585748
Alignment:
| Q |
379 |
ccactaccctttgcatgaataacaacaaacatgctcaactcgaagggtcgcgtaccactaattgcaacttgttattatcatgatcctcattttctaattt |
478 |
Q |
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| T |
36585521 |
ccactaccctttgcatgaataacaacaaacatgctcaactcgaagggtcgcgtaccactaattgcaacttgttattatcatgatcctcattttctaattt |
36585620 |
T |
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| Q |
479 |
actgttgttaccacgaaacgctgcgttttgttgttcctgctttctatacttaaacacgtaaatcaaacccgaaaccaaaatcagaatcgcaccagcaact |
578 |
Q |
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| T |
36585621 |
actgttgttaccacgaaacgctgcgttttgttgttcctgctttctatacttaaacacgtaaatcaaacctgaaaccaaaatcagaatcgcaccagcaact |
36585720 |
T |
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| Q |
579 |
ccacgtgccaaactggctaccttcagcg |
606 |
Q |
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| T |
36585721 |
ccacatgccaaactggctaccttcagcg |
36585748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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