View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-20 (Length: 452)
Name: NF4710-Insertion-20
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-20 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 53179910 - 53179541
Alignment:
| Q |
7 |
actttgtctcttccaagttcccagattatggtggaacaagaactaagtaacatgccccattgattctgctgcatgccatgcacgtagtggtcctataagt |
106 |
Q |
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| T |
53179910 |
actttgtctcttccaagttcccagattatggtggaacaagaactaagtaacatgccccattgattctgctgcatgccatgcatgtagtggtcctataagt |
53179811 |
T |
|
| Q |
107 |
ttagtatactgtgctgcttcgtgcacacatactaataaaagctcatatgttgaagctcgtgactctgttgtttatttcaaattaaatatgaccgataatt |
206 |
Q |
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| T |
53179810 |
ttagtatactgtgctgcttcgtgcacacatac---taaaagctcataagttgaagctcgtgactc---tgtttatttcaaattaaatatgaccgataatt |
53179717 |
T |
|
| Q |
207 |
ttagtacaaataatttctaaataagtactctctccggtccttttttagtacaaatgtactcaatgaatctaaaaagtcnnnnnnnnttccttataaatag |
306 |
Q |
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| T |
53179716 |
ttagtacaaataatttctaaataactactcccttcggtcctattttagtataaatgtactcaatgaatctaaaaggtc---aaagttttcttataaatag |
53179620 |
T |
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| Q |
307 |
gatcggatggagtatatttaaaaagtgatatttgtttaaccgatatttttattattagaatttactgttaatttctact |
385 |
Q |
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| T |
53179619 |
gaccatattgagtatatttaaaaagtgatatttgtttaaccgatatttttattattagaatttactgttaatttctact |
53179541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 387 - 452
Target Start/End: Complemental strand, 53179505 - 53179440
Alignment:
| Q |
387 |
ttagtctcatgatcccttaatttaatttcagataacgattttgccatttaccctttattctcgtca |
452 |
Q |
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| T |
53179505 |
ttagtctcatcatcccttaatttaatttcagataacgattttgccatttaccctttattctcgtca |
53179440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 13108032 - 13108002
Alignment:
| Q |
398 |
atcccttaatttaatttcagataacgatttt |
428 |
Q |
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| T |
13108032 |
atcccttaatttaatttcagataacgatttt |
13108002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 7329057 - 7329028
Alignment:
| Q |
398 |
atcccttaatttaatttcagataacgattt |
427 |
Q |
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| T |
7329057 |
atcccttaatttaatttcagataacgattt |
7329028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 26342438 - 26342466
Alignment:
| Q |
399 |
tcccttaatttaatttcagataacgattt |
427 |
Q |
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| T |
26342438 |
tcccttaatttaatttcagataacgattt |
26342466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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