View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-3 (Length: 760)
Name: NF4710-Insertion-3
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 145 - 760
Target Start/End: Complemental strand, 41319115 - 41318506
Alignment:
| Q |
145 |
taagtgtcttcatggctattatttgtttttgataagccaacggtaataaacatcatataaggaaatatatttatggtttgactccatgtattaaggcatt |
244 |
Q |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt |
41319016 |
T |
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| Q |
245 |
gcatttacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacagtaataagcattaaa |
344 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41319015 |
gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacagtaataagcattaaa |
41318916 |
T |
|
| Q |
345 |
cacaaatgtaatcacgttgcatggcgatgagttgattaataatatgtctgttttcacgttgaaacaattgccaaacgtatgaccggaaagaagctgggaa |
444 |
Q |
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| T |
41318915 |
cacaaatgtaatcacgttgcatggcgatgagttgattaataatatgtttgttttcacgt-------atgaccaaatgtatgaccggaaagaagctgggaa |
41318823 |
T |
|
| Q |
445 |
ttctagagttttaaaatcacggcaatattgcttttggggcgtaagaaaaaagagagaaacgtgaaaacaaacacactaaaactattacaggataatctaa |
544 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41318822 |
ttctagagttttaaaatcacagcaatattgcttt-ggggcgtaagaaaaaagagagaaacgtgaaaacaaacacactaaaactattacaggataatctaa |
41318724 |
T |
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| Q |
545 |
acacttggacgggtctatacgacttatatgagattcaaacctcgtagcttagagataagtacaaaattcatagtatccatctaattaataggcagtcgaa |
644 |
Q |
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| T |
41318723 |
acacttggacgggtctatacgacttatatgagattcaaacctcgtagcttagagataagtacaaaattcatagtatccatctaattaataggcagtcgga |
41318624 |
T |
|
| Q |
645 |
ttccaaaaactcatc--gagagttaggaattctagcaatcggttcaatcctgagattaaatttgaaccagcggaggaacaaagcagttacatatgagaat |
742 |
Q |
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| T |
41318623 |
ttgcaaaaactcatcaagagagttaggaattctagcagtcggttcaatcctgagattaaatttgaaccagcggaggaacaaagcagttacatatgagaat |
41318524 |
T |
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| Q |
743 |
agttgtaatagtcatata |
760 |
Q |
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|||||||||||||||||| |
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| T |
41318523 |
agttgtaatagtcatata |
41318506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 41322245 - 41322105
Alignment:
| Q |
8 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacacttacatatatatgttgaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41322245 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacacttacatatatatgttgaata |
41322146 |
T |
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| Q |
108 |
accaacggtaataaacatgatataaagagatatacattaag |
148 |
Q |
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| T |
41322145 |
accaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37726219 - 37726150
Alignment:
| Q |
8 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagta |
77 |
Q |
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| T |
37726219 |
atatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta |
37726150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 6128526 - 6128593
Alignment:
| Q |
262 |
tttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
329 |
Q |
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| T |
6128526 |
tttccaatggtttgtttgacttgtcttgatttgatccattacttgatgaatcttcttgattctttaca |
6128593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 44523875 - 44524200
Alignment:
| Q |
8 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacacttacatatatatgttgaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44523875 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttacacttacatatatatgtcgaata |
44523974 |
T |
|
| Q |
108 |
accaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagccaacggtaataaacatcatataagga |
207 |
Q |
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| T |
44523975 |
accaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaacagtaataaacatcatataagga |
44524074 |
T |
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| Q |
208 |
aatatatttatggtttgactccatgtattaaggcattgcatttacacatattcctttccaatggtttgtttgatttctcttgatttgat---tcattaag |
304 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44524075 |
aatatacttatggtttgactccatgtattaaggcattacattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcatcattaag |
44524174 |
T |
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| Q |
305 |
agaggaatcttcattattctttacag |
330 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44524175 |
agaggaatcttcattattctttacag |
44524200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 12503222 - 12503537
Alignment:
| Q |
8 |
atatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacacttacatatatatgttgaata |
107 |
Q |
| |
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||||| ||||||||| || ||| |||||||||| ||||||||||||||||||||| || |||||| |||||||||||| ||||||||| |||| |
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| T |
12503222 |
atatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac------atatatatgactaata |
12503315 |
T |
|
| Q |
108 |
accaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagccaacggtaataaacatcatataagga |
207 |
Q |
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| T |
12503316 |
gccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacggtaataaaccatatataagga |
12503415 |
T |
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| Q |
208 |
aatatattta------------tggtttgactccatgtattaaggcattgcatttacacatattcctttccaatggtttgtttgatttctcttgatttga |
295 |
Q |
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| T |
12503416 |
aatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcatt--cacacattgatttccaatgg---------tttatcttgatttga |
12503504 |
T |
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| Q |
296 |
ttcattaagagaggaatcttcattattctttaca |
329 |
Q |
| |
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|||||||| |||||||||||| |||||||||||| |
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| T |
12503505 |
ttcattaa-agaggaatcttcgttattctttaca |
12503537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 393 - 521
Target Start/End: Original strand, 33622080 - 33622207
Alignment:
| Q |
393 |
tgttttcacgttgaaacaattgccaaacgtatgaccggaaagaagctgggaattctagagttttaaaatcacggcaatattgcttttggggcgtaagaaa |
492 |
Q |
| |
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||||| ||| ||||||||||||||||||||| ||||| ||||||| | |||||||||||||| | ||||||||| ||||||| | || | | ||||| |
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| T |
33622080 |
tgtttccacattgaaacaattgccaaacgtacgaccgaaaagaagttaggaattctagagttatgaaatcacggtgatattgc-tctgagacacgagaaa |
33622178 |
T |
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| Q |
493 |
aaagagagaaacgtgaaaacaaacacact |
521 |
Q |
| |
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|||||||||||| || ||||| ||||||| |
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| T |
33622179 |
aaagagagaaacatggaaacacacacact |
33622207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 11831185 - 11831253
Alignment:
| Q |
261 |
ctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
329 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||||| || || |||||||||||||||||| |
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| T |
11831185 |
ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 37130584 - 37130522
Alignment:
| Q |
267 |
aatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
329 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||| || || | |||||||||||||||| |
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| T |
37130584 |
aatggtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttaca |
37130522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 11831182 - 11831133
Alignment:
| Q |
280 |
atttctcttgatttgattcattaagagaggaatcttcattattctttaca |
329 |
Q |
| |
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|||| ||||||||||||||||||| || || |||||||||||||||||| |
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| T |
11831182 |
atttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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