View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-4 (Length: 708)
Name: NF4710-Insertion-4
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 353 - 669
Target Start/End: Original strand, 46775630 - 46775946
Alignment:
| Q |
353 |
ccaaggtggtattggctaggtctatttgcaatttttgcacaatacctcacaattcaaagatattaaacatcaatgacaaatatcctccagctctcagann |
452 |
Q |
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| T |
46775630 |
ccaaggtggcattgggtaggtctatttgcaacttttgcacaatacctcacaatccaaagatattaaacatcaatgaaaaatatcctccagctctcagatt |
46775729 |
T |
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| Q |
453 |
nnnnnctttgaaaaggatacatggataaggactcgaagcagaactgaaaatcttcttctgtaattctcagaggaaaagaatggtacatggtctatatgtg |
552 |
Q |
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| T |
46775730 |
tttttctttgaaaaggatacatggataaggactcgaagcagaactgaaaatcttcttatgtaattctcagaggaaaagaatggtacatggtctatatgtg |
46775829 |
T |
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| Q |
553 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
652 |
Q |
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| T |
46775830 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
46775929 |
T |
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| Q |
653 |
gtatgtaaatccccctc |
669 |
Q |
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| T |
46775930 |
gtatgtaaatccccctc |
46775946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 46775432 - 46775548
Alignment:
| Q |
155 |
cagaagtaatcaactgaaaaactagcctgaattaaaatagccccaccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatac |
254 |
Q |
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| T |
46775432 |
cagaagtaatcaactgaaaaactagcctgaattaaaatagccccaccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatac |
46775531 |
T |
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| Q |
255 |
aaagaaatgctagattc |
271 |
Q |
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| T |
46775532 |
aaggaaatgctagattc |
46775548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 46775285 - 46775362
Alignment:
| Q |
8 |
gtaacttgttagtttatctttcactttctcttatttttctttggtgtatgctctagactactcctcgtaccattttgg |
85 |
Q |
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| T |
46775285 |
gtaacttgttagtttatctttcactttctcttatttttctttggtgtatgctctagactactcctcataccattttgg |
46775362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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