View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-5 (Length: 907)
Name: NF4710-Insertion-5
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 794; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 8 - 907
Target Start/End: Original strand, 41685548 - 41686444
Alignment:
| Q |
8 |
actgcatgattcccttaagtcatgtg--tgagttcctaacaataacaccatttctgtactgtactgttttgcatctatgtaccaggtactgtctcataac |
105 |
Q |
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| T |
41685548 |
actgcatgattcccttaagtcatgtgtgtgagttcctaacaataacaccatttctgtactgtactgttttgcatctatgtaccaggtactgtctcataac |
41685647 |
T |
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| Q |
106 |
gtttaccatttttctccctctttctatttctatcttgaaactgatgcaccacatacatgcatgcatgctcctacgtcctctttttacagcatccaagaat |
205 |
Q |
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| T |
41685648 |
gtttaccatttttctccctctttctatttctatcttgaaactgatgcaccacatacatgcatgcatgctcctacgtcctctttttacagcatccaagaat |
41685747 |
T |
|
| Q |
206 |
tttaagttttgatccatgtaattattttgtgcaataatttgcagggtagcaaaatgggtcaacaagttttctccttgttggaaagaaagaaattgttatc |
305 |
Q |
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| T |
41685748 |
tttaagttttgatccatgtaattattttgtgcaataatttgcagggtagcaaaatgggtcaacaagttttctccttgttggaaagaaagaaattgttatc |
41685847 |
T |
|
| Q |
306 |
ccttcttagcattattacctttgcactgattttagcattccattgctattttaagcttccttgtggcagtaacgttctacaacactctcttgagagtgtt |
405 |
Q |
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| T |
41685848 |
ccttcttagcattattacctttgcactgattttagcattccattgctattttaagcttccttgtggcagtaacgttctacaacactctcttgagagtgtt |
41685947 |
T |
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| Q |
406 |
cataaaactatgatggtcaacaattcatatgtcaatgtaattgacaatcattcttctatcacaatgatgcctaaggagactgaaggatctcttgtaaaag |
505 |
Q |
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| T |
41685948 |
cataaaactatgatggtcaacaattcatatgtcaatgtaattgacaatcattcttctatcacaatgatgcctaaggagactgaaggatctcttgtaaaag |
41686047 |
T |
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| Q |
506 |
ttccggagatgacatcaatttcggaaatggacaagctattgcttcaaaaccattcttcgtatcgatctatggtatatgagtaaatctaatttttagatat |
605 |
Q |
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| T |
41686048 |
ttccggagatgacatcaatttcggaaatggacaagctattgcttcaaaaccattcttcgtatcaatctatggtatatgagtaaatctaatttttagatat |
41686147 |
T |
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| Q |
606 |
ttattttaaattggaaattcaccgtgtattattcttgtggttttgttcttacgttgtgaacttgtgttaatttagagggccaaggtggttttcagctgtt |
705 |
Q |
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| T |
41686148 |
ttattttaaatt-gaaattcaccgcgtattattcttgt-gttttgttcttacgttgtgaacttgtgttaatttaga-ggccaaggtggttttcagctgtt |
41686244 |
T |
|
| Q |
706 |
gatcaagagttactgcagggccagatcagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatacttccctttttcgcaacatttccatg |
805 |
Q |
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| T |
41686245 |
gatcaagagttactgca-ggccagatcagagattgaaaatgcaccagttgtcactgatgttggaaacctttatactcccctttttcgcaacatttccat- |
41686342 |
T |
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| Q |
806 |
gtttaagaggtatcatttgattatattattattatggtattttctg-tttcaaaattgaatacaa-ggaaacggattctattcgtgcaatggacagattt |
903 |
Q |
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| T |
41686343 |
gtttaagaggtatcatttgat--tattattattatggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagattt |
41686440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 434 - 829
Target Start/End: Original strand, 51205614 - 51205983
Alignment:
| Q |
434 |
atgtcaatgtaattgacaatcattcttctatcacaatgatgcctaaggagactgaaggatctcttgtaaaagttccggagatgacatcaatttcggaaat |
533 |
Q |
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| T |
51205614 |
atgtcaatgtaatgaaccataattcttctatcgtaactgtgcctaaggtgactacaagttctcttataaaagttccggaggtaacatcaatatcagatat |
51205713 |
T |
|
| Q |
534 |
ggacaagctattgcttcaaaaccattcttcgtatcgatctatggtatatgagtaaatctaatttttagatatttattttaaattggaaattcaccgtgta |
633 |
Q |
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| T |
51205714 |
ggataagttattgcttcaaagccatgcttcgtatcgatccatggtatacgagtaaatgtaa-ttttgtttatttattttat--------------gtgta |
51205798 |
T |
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| Q |
634 |
ttattcttgtggttttgttcttacgttgtgaacttgtgttaatttagagggccaaggtggttttcagctgttgatcaagagttactgcagggccagatca |
733 |
Q |
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| T |
51205799 |
tt---cttgtg-ttctgttcttattttgctaacttgtgtt----tagagg-ccaaggtggtcttcagctgttgatcaagagctactgctgg-ccagatca |
51205888 |
T |
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| Q |
734 |
gagattgaaaatgcaccagttgtcaatgatgttggaaacctttatacttccctttttcgcaacatttccatggtttaagaggtatcatttgattat |
829 |
Q |
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| T |
51205889 |
gagattgaaaatgttccagttgtaactgatgttggaaatctttatgctcctctttttcacaatgtttccat-gtttaagaggtatcatttgattat |
51205983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 52918 - 52985
Alignment:
| Q |
688 |
aggtggttttcagctgttgatcaagagttactgcagggccagatcagagattgaaaatgcaccagttgt |
756 |
Q |
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| T |
52918 |
aggtggttttcaaatgttgatcaagagttactaca-ggcaagatcagagattgaaaatgcaccaattgt |
52985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 52785 - 52836
Alignment:
| Q |
529 |
gaaatggacaagctattgcttcaaaaccattcttcgtatcgatctatggtat |
580 |
Q |
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| T |
52785 |
gaaatgaacaagttattgcttcaaagccatgcttcgtatcgatcaatggtat |
52836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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