View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710-Insertion-7 (Length: 406)
Name: NF4710-Insertion-7
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 52605524 - 52605126
Alignment:
| Q |
8 |
tagaggagaggacctttttgttaactaggttgcaaattctaaggaacggaatgttgcacttttcactccttaatttactcatcatttatgttcaaaattc |
107 |
Q |
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| T |
52605524 |
tagaggagaggacctttttgttaactaggttgcaaattctaaggaacggaatgttgcacttttcactccttaatttactcatcatttatgttcaaaattc |
52605425 |
T |
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| Q |
108 |
catttggttaaaataatagtattactattactattgctattattttgtcaccatagaattgaagtgaattaatgaggtttggtgaaatttctgaccaaag |
207 |
Q |
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| T |
52605424 |
catttggttaaaataatagtattactattactattgctattattttgtcaccatagaattgaagtgaattaatgaggtttggtgaaatttctgaccaaag |
52605325 |
T |
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| Q |
208 |
agatgtgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatagttaatgtcccattcttataacactctctctttccctcactaacaa |
307 |
Q |
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| T |
52605324 |
agatgtgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatagttaatgtcccattcttataacactctctctttccctcactaacaa |
52605225 |
T |
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| Q |
308 |
tataaatcaattccttttgcttcctctacctccttctttttcatctccttattttctttgccaccaatattccctatttgactcaaaaatttctaggta |
406 |
Q |
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| T |
52605224 |
tataaatcaattccttttgcttcctctacctccttcttgttcatctccttattttctttgccaccaatattccctatttgactcaaaaatttctaggta |
52605126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 16906283 - 16906179
Alignment:
| Q |
163 |
gaattgaagtgaattaatgaggtttggtgaaatttctgaccaaagagatgtgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatag |
262 |
Q |
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| T |
16906283 |
gaattgaagtcaattaatgaggtttggtacaatttctgaccaaa---ttgtgatgtatcaaggtc----tctttaactgc--atatccgaggtaccatag |
16906193 |
T |
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| Q |
263 |
ttaatgtcccattc |
276 |
Q |
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||||||||| |||| |
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| T |
16906192 |
ttaatgtcctattc |
16906179 |
T |
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