View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4710R-Insertion-1 (Length: 1060)

Name: NF4710R-Insertion-1
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4710R-Insertion-1
NF4710R-Insertion-1
[»] chr3 (4 HSPs)
chr3 (11-951)||(52686293-52687231)
chr3 (778-887)||(38700720-38700830)
chr3 (776-847)||(41575711-41575783)
chr3 (776-821)||(30861857-30861902)
[»] chr4 (2 HSPs)
chr4 (776-891)||(18372318-18372434)
chr4 (776-891)||(18324095-18324213)
[»] chr8 (3 HSPs)
chr8 (776-892)||(36443246-36443363)
chr8 (393-459)||(4666785-4666851)
chr8 (776-892)||(22503511-22503629)
[»] chr5 (3 HSPs)
chr5 (778-879)||(16524068-16524170)
chr5 (776-879)||(31312126-31312230)
chr5 (776-879)||(31362174-31362278)
[»] chr7 (2 HSPs)
chr7 (777-865)||(27384740-27384829)
chr7 (776-849)||(24535439-24535513)
[»] chr1 (4 HSPs)
chr1 (776-849)||(42256341-42256414)
chr1 (776-846)||(25542189-25542259)
chr1 (776-844)||(12024890-12024960)
chr1 (776-891)||(907490-907602)
[»] chr6 (2 HSPs)
chr6 (776-879)||(14339437-14339540)
chr6 (776-887)||(31725554-31725666)
[»] chr2 (1 HSPs)
chr2 (838-891)||(8922277-8922331)


Alignment Details
Target: chr3 (Bit Score: 755; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 11 - 951
Target Start/End: Complemental strand, 52687231 - 52686293
Alignment:
Q  11 ttatggctactgtcgcgcaagaagaacttctcacgtaaacaaagaatgattccttgttgtttgtgttttaagtaaaataaaataacacatgttgatttta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  52687231 ttatggctactgtcgcgcaagaagaacttctcacgtaaacaaagaatgattccttgttgtccgtgttttaagtaaaataaaataacacatgttgatttta 52687132  T
Q  111 ttcataaatatgacaaagcataaccaaaaacacaaatttaccgattgaataactattctcttaaacacaatacacccaagtcttcaaattcatcatatgt 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52687131 ttcataaatatgacaaagcataaccgaaaacacaaatttaccgattgaagaactattctcttaaacacattacacccaagtcttcaaattcatcatatgt 52687032  T
Q  211 gaagttagaaaaacaaattccttcataaaatttatcccaaaaatatatacaaatgactcttttgtcattaaccatatttttgatagataaatatgataag 310  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52687031 gaagttagaaaaacgaattccttcgtaaaatttatcccaaaaatatatacaaatgactcttttgtcattaaccatatttttgaaagataaatatgataag 52686932  T
Q  311 ttgacaattaaattgttgtccaacagtgtatatttatatggattaggcattatttgattttctcttttactcttattattaattataaatggtgtatctt 410  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||    
T  52686931 ttgacaattaaatttttgttcaacagtgtatatttatatggattaggcattatttgattttctctttaactcgtattattaattataaatggtgtatttt 52686832  T
Q  411 tctatgattgtcaaatacgttgttgagttttggatgttcaaataacattgttcttttttaaaatgttagagtggtattatatgaacatctaaacgttgac 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  52686831 tctatgattgtcaaatacgttgttgagttttggatgttcaaataacattattcttttttaaaatgttagagtggtattatataaacatctaaacattgac 52686732  T
Q  511 aacatatttaaaatcgtatagacatccatcttataactatcttttatatacaaactactctcttcatccctaattataaaataacttctaaannnnnnnn 610  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  52686731 aacatatttaaaatcgtataaacatccatcttataactatcttttatatacaaactactctcttcatccctaattataaaataacttctaaaattttttt 52686632  T
Q  611 atcccttaatataaaacaatttttcataattcagcatacattaacgatttctttataaaaattcacatatttaaagtaccattgaaaaacatatgctatt 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52686631 atcccttaatataaaacaatttttcataattcagcatacattaacgatttctttataaaaattcacatatttaaagtaccattgaaaaacatattctatt 52686532  T
Q  711 atgtttaggtgcagaggtggatccagaaataattgtttggatgtgcactataatgcatgcacacgatttatgttttaataagcattaagcacaaaattga 810  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52686531 atgttt--------aggtggatccagaaataattgtttggatgtgcactataatgcatgcacacgatttatgttttaataagcattaagcacaaaattga 52686440  T
Q  811 ccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgacttgaaagtttgatagt-aaatttaccgagatagag- 907  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  52686439 ccatcaaaaaattaaattttataccttaaaaattcaaaataattatctacacatttcaattgacttgaaagtttgatagtaaaatttaccgagatagaga 52686340  T
Q  908 ataggtggagtcgt-agaataatttact--aaaatcaaagatatttt 951  Q
    |||||  ||||||| |||  ||||||||  |||||||||||||||||    
T  52686339 atagggtgagtcgtaagataaatttacttaaaaatcaaagatatttt 52686293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 778 - 887
Target Start/End: Complemental strand, 38700830 - 38700720
Alignment:
Q  778 ttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgacttg 876  Q
    ||||| ||||||||  || || |||||| ||||||||||||||||||| ||  ||||||| |||||||||||  |||||||| ||||||| | |||||||    
T  38700830 ttatgatttaataataatcaaacacaaagttgaccatcaaaaaattaatttgcataccttaaaaattcaaaataattatctatacatttcgaatgacttg 38700731  T
Q  877 aaagtttgata 887  Q
    ||||| |||||    
T  38700730 aaagtgtgata 38700720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 847
Target Start/End: Original strand, 41575711 - 41575783
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatc-aaaaaattaaattttatacctttaaaattcaa 847  Q
    ||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||| ||||| || |||||||||    
T  41575711 atttatgttataataagcattaaacacaagattgaccatcaaaaaaattaaattgtatacattaaaaattcaa 41575783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 821
Target Start/End: Original strand, 30861857 - 30861902
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaa 821  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  30861857 atttaagttttaataagcattaagaacaaaattgaccataaaaaaa 30861902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 776 - 891
Target Start/End: Complemental strand, 18372434 - 18372318
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgact 874  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||| || || |||||||| |||||||||||  |||||| | ||||||||| ||| |    
T  18372434 atttatattttaataagcatcaagcacaaagttgaccatcaaaaaataaagttatataccttaaaaattcaaaataattatccatacatttcaaatgatt 18372335  T
Q  875 tgaaagtttgatagtaa 891  Q
    ||||||| |||||||||    
T  18372334 tgaaagtgtgatagtaa 18372318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 776 - 891
Target Start/End: Original strand, 18324095 - 18324213
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccat-caaaaaattaaattttat-acctttaaaattcaaaa-cattatctacacatttcaattga 872  Q
    |||||| ||||||||||||| ||||||||| |||||||| |||||||| || || ||| ||||| |||||||||||  |||||| | ||||||||| |||    
T  18324095 atttatattttaataagcatcaagcacaaagttgaccatacaaaaaataaagttatataaccttaaaaattcaaaataattatccatacatttcaaatga 18324194  T
Q  873 cttgaaagtttgatagtaa 891  Q
     |||||||| |||||||||    
T  18324195 tttgaaagtgtgatagtaa 18324213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 776 - 892
Target Start/End: Complemental strand, 36443363 - 36443246
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgact 874  Q
    ||||||||| |||||| ||||||  | || ||||||||||||||||||||||| |||||||| |||||||||||  ||||||||  |||||| |||||||    
T  36443363 atttatgttataataaacattaaatataagattgaccatcaaaaaattaaattgtataccttaaaaattcaaaataattatctatgcatttcgattgact 36443264  T
Q  875 tgaaagtttgatagtaaa 892  Q
    ||||| | ||||| ||||    
T  36443263 tgaaattgtgataataaa 36443246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 4666851 - 4666785
Alignment:
Q  393 ttataaatggtgtatctttctatgattgtcaaatacgttgttgagttttggatgttcaaataacatt 459  Q
    ||||||||||||||| ||| |||| ||||||||||||||||  |||||||| |||||||||||||||    
T  4666851 ttataaatggtgtatttttatatggttgtcaaatacgttgtcaagttttggttgttcaaataacatt 4666785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 892
Target Start/End: Complemental strand, 22503629 - 22503511
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaa--ttaaattttatacctttaaaattcaaaa-cattatctacacatttcaattga 872  Q
    ||||||||||||||||||||||| ||| |||| ||||| |||||||  ||||||| |||| ||  ||| |||||||  ||||||||| | |||| | |||    
T  22503629 atttatgttttaataagcattaaacacgaaatggaccaacaaaaaaagttaaattatatatctgaaaatttcaaaataattatctacgc-tttcgaatga 22503531  T
Q  873 cttgaaagtttgatagtaaa 892  Q
    ||||||||| ||||| ||||    
T  22503530 cttgaaagtgtgataataaa 22503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 778 - 879
Target Start/End: Complemental strand, 16524170 - 16524068
Alignment:
Q  778 ttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgacttg 876  Q
    ||||||||||||||||||||| || ||| |||| ||||||||| ||||||| |||||||| |||||||||||  |||||||||| ||||  ||| |||||    
T  16524170 ttatgttttaataagcattaaacataaagttgatcatcaaaaagttaaattgtataccttaaaaattcaaaattattatctacatattttgattaacttg 16524071  T
Q  877 aaa 879  Q
    |||    
T  16524070 aaa 16524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 879
Target Start/End: Complemental strand, 31312230 - 31312126
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaa-aacattatctacacatttcaattgact 874  Q
    ||||||| | ||||||||||||| ||||| ||||| ||||||||||||||||| ||||  || ||||||||| |  |||| ||| |||||||||||||||    
T  31312230 atttatgatataataagcattaaacacaagattgatcatcaaaaaattaaattgtatatgttaaaaattcaagataattacctatacatttcaattgact 31312131  T
Q  875 tgaaa 879  Q
    |||||    
T  31312130 tgaaa 31312126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 879
Target Start/End: Complemental strand, 31362278 - 31362174
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaa-aacattatctacacatttcaattgact 874  Q
    ||||||||| ||||||| | ||| |||||   |||| |||||||||||||||| |||||||| |||||| || |  |||| ||| ||||||| |||||||    
T  31362278 atttatgttataataagtactaaacacaaggatgactatcaaaaaattaaattgtataccttaaaaattgaagataattacctatacatttcgattgact 31362179  T
Q  875 tgaaa 879  Q
    |||||    
T  31362178 tgaaa 31362174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 777 - 865
Target Start/End: Original strand, 27384740 - 27384829
Alignment:
Q  777 tttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacattt 865  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||  || |||| |||||||||||  |||||||| ||||||    
T  27384740 tttaagttttaataagcattaggtacaaaattgaccatcaaaaaattaaattacatgccttaaaaattcaaaataattatctatacattt 27384829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 849
Target Start/End: Complemental strand, 24535513 - 24535439
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaa-aaaattaaattttatacctttaaaattcaaaa 849  Q
    ||||||||||||||||||||||| |||||| || ||||||||   |||||||||  |||| ||||||||||||||    
T  24535513 atttatgttttaataagcattaaacacaaagtttaccatcaacgtaattaaattacatacgtttaaaattcaaaa 24535439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 849
Target Start/End: Original strand, 42256341 - 42256414
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa 849  Q
    |||||| ||||||||||||||||||||||| |||||||| |||| ||||| |  |||| ||| |||||||||||    
T  42256341 atttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaa 42256414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 846
Target Start/End: Complemental strand, 25542259 - 25542189
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattca 846  Q
    |||||||||||||||||||| || ||||||| ||||||| ||||| |||||||  ||| ||| ||||||||    
T  25542259 atttatgttttaataagcatcaaacacaaaaatgaccataaaaaagttaaattacatatcttaaaaattca 25542189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 844
Target Start/End: Complemental strand, 12024960 - 12024890
Alignment:
Q  776 atttatgttttaataag--cattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaatt 844  Q
    ||||||||| |||||||  |||||| ||||| ||||||| | ||||||||||||| |||||||| ||||||    
T  12024960 atttatgttataataagagcattaaacacaagattgaccgtaaaaaaattaaattgtataccttaaaaatt 12024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 776 - 891
Target Start/End: Complemental strand, 907602 - 907490
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgact 874  Q
    ||||||||||||||||||||||| |||||| || || || |||||   |||||  ||||| |||||||||||||  |||||||| |||||| || | |||    
T  907602 atttatgttttaataagcattaaacacaaagttaacaataaaaaa---aaattgcatacc-ttaaaattcaaaataattatctaaacattttaagtaact 907507  T
Q  875 tgaaagtttgatagtaa 891  Q
    | ||||| |||||||||    
T  907506 taaaagtatgatagtaa 907490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 879
Target Start/End: Complemental strand, 14339540 - 14339437
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaaca-ttatctacacatttcaattgact 874  Q
    ||||||||| |||||| |||||| || || |||| |||| ||||||| ||||| |||||||| ||||| ||| | | ||||||| ||||||| |||||||    
T  14339540 atttatgttataataaacattaaacaaaagattgtccataaaaaaat-aaattgtataccttaaaaatacaagataattatctatacatttcgattgact 14339442  T
Q  875 tgaaa 879  Q
    |||||    
T  14339441 tgaaa 14339437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 887
Target Start/End: Original strand, 31725554 - 31725666
Alignment:
Q  776 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttatacctttaaaattcaaaa-cattatctacacatttcaattgact 874  Q
    ||||||| ||||| ||| |||||| | ||| ||||| |||||||| |||||||  |||| || |||||||||||  ||||||||   ||||| |||||||    
T  31725554 atttatgatttaacaagtattaagtataaagttgactatcaaaaagttaaattacatactttaaaaattcaaaataattatctatgtatttcgattgact 31725653  T
Q  875 tgaaagtttgata 887  Q
    ||||||| |||||    
T  31725654 tgaaagtatgata 31725666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 838 - 891
Target Start/End: Original strand, 8922277 - 8922331
Alignment:
Q  838 taaaattcaaaaca-ttatctacacatttcaattgacttgaaagtttgatagtaa 891  Q
    |||||||||||| | |||||||  |||||||| ||||||||||||||||||||||    
T  8922277 taaaattcaaaataattatctaagcatttcaagtgacttgaaagtttgatagtaa 8922331  T

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