View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4710R-Insertion-2 (Length: 860)
Name: NF4710R-Insertion-2
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710R-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 194 - 843
Target Start/End: Complemental strand, 55665727 - 55665084
Alignment:
| Q |
194 |
ttgaactatgttgaaaactaaaaccttaaaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55665727 |
ttgaactatgttgaaaactaaaaccttaaaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgttttcagt |
55665628 |
T |
|
| Q |
294 |
catggtgcactgatcccgctgttaacccagttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggca |
393 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55665627 |
catggtgcgctgatcccgctgttaacccagttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggca |
55665528 |
T |
|
| Q |
394 |
agccaccacccccaattgagcaggtagttgttgtttttgttaaattaaaattgaacctgcaagacatttgtctctgtattaatactaggttttttatgga |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55665527 |
agccaccacccccaattgagcaggtagttgttgtttttgttaaattaaaattgaacctgcaagacatttgtctgtgtattaatactaggttttttatgga |
55665428 |
T |
|
| Q |
494 |
caggtgaggccagcgctgccctctattgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctg |
593 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55665427 |
caggtgaggccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctg |
55665328 |
T |
|
| Q |
594 |
atggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgca |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55665327 |
atggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccctggtgca |
55665228 |
T |
|
| Q |
694 |
ccaataatttgtttcaattattgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttca |
793 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55665227 |
ccaataatttgtttcaattatt----gattattttggctctaaatgtatgcgcatgttttgaaggtacccatctccttcagtgttgactcctgtacttca |
55665132 |
T |
|
| Q |
794 |
cacgttgggaaataattgttgctggagacaatatgcagacctcaggtaat |
843 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
55665131 |
cacgctgggaaat-attgttgctggggacaatatgcaga-ctcaggtaat |
55665084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 236 - 843
Target Start/End: Complemental strand, 54862293 - 54861693
Alignment:
| Q |
236 |
gtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaacccagttgaatgagcaa |
335 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| ||| |
|
|
| T |
54862293 |
gtgggcattgggaaacattgctggtgattcccctaggtgtcgtgatcttgttctcagtcatggtgccctgatcccgctgttatcccagttgaatgaccaa |
54862194 |
T |
|
| Q |
336 |
gcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggtagttgttgtttttgtta |
435 |
Q |
| |
|
|| |||||| ||| ||||| ||||| |||||| |||||| |||||||| |||||||||| ||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
54862193 |
acagagctttatatattgagaaatgccatttggaccttgtcaaacttttgcaggggcaagccacaacccccacttgagcaggtaattgttgtttttatta |
54862094 |
T |
|
| Q |
436 |
aattaaaattgaacctgcaa---gacatttgtctctgtattaatactaggttttttatggacaggtgaggccagcgctgccctctattgagcgtttgatt |
532 |
Q |
| |
|
|||||||| ||||||| ||| ||| ||| ||| |||||||||||||| |||| |||||||| ||||||||||||| ||| || | ||| |||| || |
|
|
| T |
54862093 |
aattaaaactgaacctacaagacgacctttatctgtgtattaatactagaattttgatggacagatgaggccagcgcttcccgctctcaagcatttggtt |
54861994 |
T |
|
| Q |
533 |
ttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcag |
632 |
Q |
| |
|
|| ||||| ||| ||||||||||| || |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
54861993 |
ttttccaaagac---gaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaacaaatgacaatatccaagcggtgatcgaggcag |
54861897 |
T |
|
| Q |
633 |
gtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggct |
732 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||| || | |||| || |||||| | | || ||||| |||||||||||||||| |
|
|
| T |
54861896 |
gtgtatgtggcagactggtgcagctccttctgtaagtaccaattcttat-tccctggtcagccaatattctattgcaatt----attgattattttggct |
54861802 |
T |
|
| Q |
733 |
ctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaataattgttgctggagacaatatgcaga |
832 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
54861801 |
ctaaatatatgtgcatgttttgaaggcacccatctccttcagtgctgattcctgtcgttcgcacaatgggaaat-attgtaactggagacaatatgcaga |
54861703 |
T |
|
| Q |
833 |
cctcaggtaat |
843 |
Q |
| |
|
|||||||||| |
|
|
| T |
54861702 |
-ctcaggtaat |
54861693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 222 - 776
Target Start/End: Original strand, 55635252 - 55635807
Alignment:
| Q |
222 |
aaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaaccc |
321 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||||||| |||||| ||||||||||||||||| | ||||||||||| ||||| || |||||| ||| |
|
|
| T |
55635252 |
aaattgtaggctgcgtgggcattgggaaacgttgccggtgagtccccttggtgccgtgatcttgttctcagtcatggtgccctgattccactgttatccc |
55635351 |
T |
|
| Q |
322 |
agttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggtagt |
421 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||||| |||||| |||||||| || ||||||| ||||| | ||||||||||| | |
|
|
| T |
55635352 |
agttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaacttttgcaggggaaagccacaacccctatttgagcaggtaat |
55635451 |
T |
|
| Q |
422 |
tgttgtttttgttaaattaaaat-tgaacctgcaaga---catttgtctctgtattaatactaggtt---ttttatggacaggtgaggccagcgctgccc |
514 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | ||| | | |||||||||||||| || ||||||| ||||||||||||||| || ||| |
|
|
| T |
55635452 |
tgttgtttttgttaaattaaaaactaaacctgcaagaagacctttatttgtgtattaatactagattattttttatgtacaggtgaggccagcacttccc |
55635551 |
T |
|
| Q |
515 |
tctattgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcata-tctttctgatggaacaaatgacaaaatc |
613 |
Q |
| |
|
|| | |||||||||||||| |||||||| ||||||||||||| | |||||||| |||||| ||||||| | |||||||||||| |||||||||||| |
|
|
| T |
55635552 |
actctcgagcgtttgattttttccaatga---tgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaatgaatgacaaaatc |
55635648 |
T |
|
| Q |
614 |
caagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaatta |
713 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||| | |||||| | | || ||||| |
|
|
| T |
55635649 |
caagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccaattcttctatccctgttcaaccaattttctattgcaatt- |
55635747 |
T |
|
| Q |
714 |
ttgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtg |
776 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
55635748 |
---attgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttcagtg |
55635807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 222 - 806
Target Start/End: Complemental strand, 55659487 - 55658904
Alignment:
| Q |
222 |
aaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaaccc |
321 |
Q |
| |
|
|||||| |||||| |||| |||||||||| ||||||||||||||||||| || |||||||||||| | ||||||||||| |||||||||||||| ||| |
|
|
| T |
55659487 |
aaattgtaggctgcgtggacattgggaaatgttgccggtgattcccctagttgtcgtgatcttgttctcagtcatggtgcgttgatcccgctgttatccc |
55659388 |
T |
|
| Q |
322 |
agttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggtagt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||| |||||||| ||| || |||||||||||| ||||||||||||| |
|
|
| T |
55659387 |
agttgaatgagcaagcaaagctttctatgctgagaattgctacgttggccctgtcaaacttttgcagaggaaaaccaccacccccatttgagcaggtagt |
55659288 |
T |
|
| Q |
422 |
tgttgtttttgttaaattaaaattgaacctgcaaga--catttgtct-ctgtattaatactaggttttttatggacaggtgaggccagcgctgccctcta |
518 |
Q |
| |
|
|||||| ||||||||||||||| |||| || |||| |||| | | | |||||||||| | |||| ||||| ||||||||| ||| || || | |
|
|
| T |
55659287 |
tgttgtgtttgttaaattaaaactgaatatgtaagaagaatttatttggtttattaatacttgaattttgatggataggtgaggcaagcacttcctaccc |
55659188 |
T |
|
| Q |
519 |
ttgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttct---gatggaacaaatgacaaaatcca |
615 |
Q |
| |
|
| |||||||||||| |||||| |||||||||||| |||| || ||||| |||||| |||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
55659187 |
tcaggcgtttgattttttccaat---gatgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatggttcaaatgacgaaatcca |
55659091 |
T |
|
| Q |
616 |
agctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattatt |
715 |
Q |
| |
|
||| || |||||||| || |||||| ||||| || ||||| ||| ||||||||||| | || |||||| || |||||| | |||| ||||| |
|
|
| T |
55659090 |
agcggtaatcgaggctggcatatgtgatagactagtagagctccttttgtaagtaccaaatcttatatccctggtcaaccaattttctgttgcaatt--- |
55658994 |
T |
|
| Q |
716 |
gattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaat |
806 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
55658993 |
-gttgattattttggctctaaatctacgcgcatgttttgaaggcgcccgtctccttcagtgttgactcctgcacttcaaacggtgggaaat |
55658904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 222 - 833
Target Start/End: Original strand, 54627034 - 54627641
Alignment:
| Q |
222 |
aaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaaccc |
321 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||| ||||| ||||||| || ||| ||| |
|
|
| T |
54627034 |
aaattgtaggctgcgtgggcattgggaaacattgctggtgattcccctagaggccgtgatcttgttctcagtcacggtgccctgatcctacttttatccc |
54627133 |
T |
|
| Q |
322 |
agttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggtagt |
421 |
Q |
| |
|
|| |||||||||||| | ||||| || ||||||| |||| ||||| ||||||| |||||||| |||||||||| |||| || ||||||||||||| |
|
|
| T |
54627134 |
agctgaatgagcaagaagggctttataggctgagaaatgccgtttggacgctgtcaaacttttgcaggggcaagccacaacccgcacttgagcaggtagt |
54627233 |
T |
|
| Q |
422 |
tgttgttttt-gttaaattaaaattgaacct---gcaagacatttgtctctgtattaatactaggttttttatggacaggtgaggccagcgctgccctct |
517 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||| | ||| ||| ||| |||||||||||||| |||| |||||||||||||| ||||||| ||| || |
|
|
| T |
54627234 |
tgttgtttttagttaaaataaaactgaacctctgagatgacctttatctgtgtattaatactagaattttgatggacaggtgaggtcagcgcttcccgct |
54627333 |
T |
|
| Q |
518 |
attgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaag |
617 |
Q |
| |
|
| || ||||| |||| |||| | ||||||| |||||||| || |||||||||||| |||| ||||||||||||||||||| ||| || ||||||| |
|
|
| T |
54627334 |
ctcaagtgtttggttttttcca---aagatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaag |
54627430 |
T |
|
| Q |
618 |
ctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattga |
717 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||| | | |||| ||||||||||||| || |||||| || |||||| | | || ||| | | |
|
|
| T |
54627431 |
cggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagt----a |
54627526 |
T |
|
| Q |
718 |
ttgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaataattgttgctg |
817 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| | || ||||| ||||| ||| |||||||| ||||| ||| |
|
|
| T |
54627527 |
ttgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaat-attgtatctg |
54627625 |
T |
|
| Q |
818 |
gagacaatatgcagac |
833 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
54627626 |
gagatgatatgcagac |
54627641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 55665900 - 55665741
Alignment:
| Q |
8 |
agttacgaacatatcatccggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttagttcacctagttat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55665900 |
agttacgaacatatcatccggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttagttcacctagttat |
55665801 |
T |
|
| Q |
108 |
gatcttcagtaccaggtatatttatactaaagtgtaatgacagtagaactgggattgtcc |
167 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55665800 |
gatcttcggtaccaggtatatttatactaaagtgtcatgacagtagaactgggattgtcc |
55665741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 563 - 833
Target Start/End: Complemental strand, 52985656 - 52985393
Alignment:
| Q |
563 |
gatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttc |
662 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
52985656 |
gatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagctacttc |
52985557 |
T |
|
| Q |
663 |
agtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggctctaaatgtatgcgcatgttttgaaggcacc |
762 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52985556 |
tgtaagtaccaa-ttttcgatccctggtcaaccaat-ttttgttgcaatt----attgattattttggctctaaatgtatgtgcatgttttgaaggcacc |
52985463 |
T |
|
| Q |
763 |
catctccttcagtgttgactcctgtacttcacacgttgggaaataattgttgctggagacaatatgcagac |
833 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||| | |||||| ||||| |||||||| |||||||||| |
|
|
| T |
52985462 |
catctccttcagtgctgatacctgtaatttgcacaattggaaat-attgtaactggagacgatatgcagac |
52985393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 549 - 657
Target Start/End: Complemental strand, 3671806 - 3671698
Alignment:
| Q |
549 |
aagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagact |
648 |
Q |
| |
|
|||||||| || | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3671806 |
aagaagtcatggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagact |
3671707 |
T |
|
| Q |
649 |
ggtggagct |
657 |
Q |
| |
|
||||||||| |
|
|
| T |
3671706 |
ggtggagct |
3671698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 237 - 405
Target Start/End: Complemental strand, 3672036 - 3671868
Alignment:
| Q |
237 |
tgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaacccagttgaatgagcaag |
336 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
3672036 |
tgggcgttgggaaacgttgcctgtgattcccctagttgccgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagctta |
3671937 |
T |
|
| Q |
337 |
caaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccc |
405 |
Q |
| |
|
|| | ||||||||||||||||||| ||| | |||||||||| |||||||| ||||| |||| ||||| |
|
|
| T |
3671936 |
cagatatttctatgctgagagttgcaacgcgaaccctgtcaaacttttgcatgggcaaaccacaacccc |
3671868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 222 - 362
Target Start/End: Complemental strand, 52985940 - 52985800
Alignment:
| Q |
222 |
aaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaaccc |
321 |
Q |
| |
|
|||||| |||||||| ||||||| |||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||| || || ||| |
|
|
| T |
52985940 |
aaattgtaggctgtgcgggcattaggaaacgttgccgttgattcccctatgtgccgtgatcttgttttcagtcatggtgccttgatcccattgctatccc |
52985841 |
T |
|
| Q |
322 |
agttgaatgagcaagcaaagctttctatgctgagagttgcc |
362 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
52985840 |
agttcaatgatcaaacaaggctttctatgctgagagttgcc |
52985800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 54862490 - 54862338
Alignment:
| Q |
15 |
aacatatcatccggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttagttcacctagttatgatcttc |
114 |
Q |
| |
|
|||||| |||| |||||||| ||||| | ||||||| || | ||||||||||||||||||||| || || |||||||||||||||| ||| ||| | ||| |
|
|
| T |
54862490 |
aacatagcatctggaacttcggagaacactaaggtggtaattgatcatggggcagtaccaatatttatcaagctacttagttcaccaagtgatgctgttc |
54862391 |
T |
|
| Q |
115 |
agtaccaggtatatttatactaaagtgtaatgacagtagaactgggattgtcc |
167 |
Q |
| |
|
| ||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
54862390 |
gggcacaggtatgtttatactaaaatgtaatagcagtagaactgggattgtcc |
54862338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 519 - 670
Target Start/End: Complemental strand, 50191881 - 50191733
Alignment:
| Q |
519 |
ttgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagc |
618 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||| ||||| || ||||| || ||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
50191881 |
ttgagcgtttgattttgtcg---gaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga |
50191785 |
T |
|
| Q |
619 |
tgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagta |
670 |
Q |
| |
|
| || || ||||||||||||||| || ||||| |||| ||| ||| |||| |
|
|
| T |
50191784 |
aattattgacgcaggtgtatgtggccgattggtgcagctccttaagtgagta |
50191733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 54626873 - 54627013
Alignment:
| Q |
27 |
ggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttagttcacctagttatgatcttcagtaccaggtat |
126 |
Q |
| |
|
|||||||| ||||| | ||||||| |||| |||||||| ||||||||||| ||||| |||| ||||||||||| || | ||| ||| | |||||||| |
|
|
| T |
54626873 |
ggaacttctgagaacactaaggtggtagttgatcatggcgcagtaccaatgtttgtcaagcttcttagttcaccatgtgacgatgttcggggccaggtat |
54626972 |
T |
|
| Q |
127 |
atttatactaaagtgtaatgacagtagaactgggattgtcc |
167 |
Q |
| |
|
|| |||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
54626973 |
gttaatactaaattgtaatagcagtagaaccgggattgtcc |
54627013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 55659634 - 55659559
Alignment:
| Q |
57 |
gatcatggggcagtaccaatacttgtcgagctacttagttcacctagttatgatcttcagtaccaggtatatttat |
132 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
55659634 |
gatcacggggctgtaccaatacttgtcaagctacttagttcacctagcgatgatgttcgagagcaggtatatttat |
55659559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 51315872 - 51315913
Alignment:
| Q |
239 |
ggcattgggaaacattgccggtgattcccctaggtgccgtga |
280 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
51315872 |
ggcattgggaaacattgccgctgattcccctagttgccgtga |
51315913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 205 - 807
Target Start/End: Original strand, 9889520 - 9890105
Alignment:
| Q |
205 |
tgaaaactaaaaccttaaaattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcact |
304 |
Q |
| |
|
|||| |||||||| | |||||| ||||| |||||| ||||||||| ||||| ||||||||||||| |||||| |||||||| | ||||||||||| | |
|
|
| T |
9889520 |
tgaacactaaaactctgaaattgtaggcttcgtgggcgttgggaaacgttgcctgtgattcccctagttgccgttatcttgttctcagtcatggtgccat |
9889619 |
T |
|
| Q |
305 |
gatcccgctgttaacccagttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccaccc |
404 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||| | |||||||||||||| |||| ||| | |||||||||| |||||| | ||||| || | |||| |
|
|
| T |
9889620 |
gatcccgctgttatcccacttgaatgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgtaggggcaaaccgcaaccc |
9889719 |
T |
|
| Q |
405 |
ccaattgagcaggtagttgttgtttttgttaaattaaaattgaacctgcaa--gacatttgtctctgtattaatactaggttttttatggacaggtgagg |
502 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| | ||| || ||| ||| | | |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9889720 |
ctgtttgagcaggtagttgttgtttttgttgaattaaaaaa-acccttaaaaagacctttatttgtgtattaatactagattttttatggacagttgagg |
9889818 |
T |
|
| Q |
503 |
ccagcgctgccctctattgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaa |
602 |
Q |
| |
|
||||| || ||| || | |||| ||||||||| |||||||| ||||||||||||| | |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
9889819 |
ccagcacttcccactctcgagcttttgattttttccaatga---tgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaa |
9889915 |
T |
|
| Q |
603 |
atgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatt |
702 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||| | |
|
|
| T |
9889916 |
atgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgtaagtaccaattcttctatccc---tgc--------tc |
9890004 |
T |
|
| Q |
703 |
tgtttcaattattgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttggg |
802 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| ||| |||||||||||||| |||| |||||||||||| ||| ||||| ||||| ||| ||||| |
|
|
| T |
9890005 |
tgtttcaatt----atttattaatttggctctaaatgcatgtgcatgttttgaaggaacccttctccttcagtggtgattcctgcacttcgcacattggg |
9890100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 9e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 223 - 807
Target Start/End: Original strand, 13401431 - 13402017
Alignment:
| Q |
223 |
aattgcaggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaaccca |
322 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
13401431 |
aattgtaggctgtgtgggcattgggaaatgttgctggtgattcacctaggtgccgcgatcttgttcttagccatggtgccctgatcccgctgttaaccca |
13401530 |
T |
|
| Q |
323 |
gttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggtagtt |
422 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||| ||||| ||||||| |||||||| |||||||||| ||| ||| |||| ||||||||| |
|
|
| T |
13401531 |
gttgaatgagcaggcaaagctttcaatgctgagaaatgccacatggactctgtcaaacttttgcaggggcaagccacaacctccatttgatcaggtagtt |
13401630 |
T |
|
| Q |
423 |
gttg-tttttgt--taaattaaaattgaacctgcaa---gacatttgtctctgtattaatacta---ggttttttatggacaggtgaggccagcgctgcc |
513 |
Q |
| |
|
|||| ||||||| ||||| | || ||||| ||||| | | || | | |||||||||| || | ||| ||||||||||||||||||| || || |
|
|
| T |
13401631 |
gttgttttttgtaataaatcataactgaacatgcaaacgggccttcttttgtgtattaataataattgaactttgatggacaggtgaggccagcacttcc |
13401730 |
T |
|
| Q |
514 |
ctctattgagcgtttgattttgtccaatgacgatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatc |
613 |
Q |
| |
|
|| ||||||||||| |||| || ||| ||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
13401731 |
ggctcttgagcgtttggttttttcaaat---gatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaacaaatgacaaaatc |
13401827 |
T |
|
| Q |
614 |
caagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaatta |
713 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||| |||| |||| || |||| | ||| ||||| | | | |||| | || | || || ||| |
|
|
| T |
13401828 |
caagcggtgattgaggcaggtgtatgtggcagactagtgcagctccttctgtgagtaacgattcatctattcttatttgaccagtgatcttttgcagtta |
13401927 |
T |
|
| Q |
714 |
ttgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaata |
807 |
Q |
| |
|
||||||| ||||| |||||||| ||| |||||| ||| ||||||||||||||||||||| ||| |||| ||||| |||| ||||||||| |
|
|
| T |
13401928 |
ttgattg----ttttgactctaaatttatatgcatgtgttgtaggcacccatctccttcagtgctgatccctgcacttcgcacggtgggaaata |
13402017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 13401240 - 13401365
Alignment:
| Q |
10 |
ttacgaacatatcatccggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttagttcacctagttatga |
109 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||| ||||||| || | |||||||||||||| || ||| |||| ||||||||||||| || ||| |||| |
|
|
| T |
13401240 |
ttacaaacatagcatccggaacttctgagaatactaaggtggtaattgatcatggggcagtgccgatatttgtgaagctacttagttctccaagtgatga |
13401339 |
T |
|
| Q |
110 |
tcttcagtaccaggtatatttatact |
135 |
Q |
| |
|
| ||| | | ||||||| || ||||| |
|
|
| T |
13401340 |
tgttcgggagcaggtatgttgatact |
13401365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 46154721 - 46154649
Alignment:
| Q |
545 |
gatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaag |
617 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| | ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
46154721 |
gatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag |
46154649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 387
Target Start/End: Complemental strand, 46155343 - 46155184
Alignment:
| Q |
228 |
caggctgtgtgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgtttttagtcatggtgcactgatcccgctgttaacccagttga |
327 |
Q |
| |
|
||||| ||||||||||||||||| |||| || ||||| ||||| ||||||||||||||| | ||||||| || || | || ||||| | || |||| |
|
|
| T |
46155343 |
caggccgtgtgggcattgggaaatgttgctggagattcgcctagatgccgtgatcttgttctcggtcatggagctttgcttcctctgttggcgcaattga |
46155244 |
T |
|
| Q |
328 |
atgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgca |
387 |
Q |
| |
|
||||||| || || ||||||||||| ||| |||||| ||||| || |||| ||| |||| |
|
|
| T |
46155243 |
atgagcatgctaaactttctatgcttagaaatgccacatggacactctcaaacttctgca |
46155184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 545 - 621
Target Start/End: Complemental strand, 37310597 - 37310521
Alignment:
| Q |
545 |
gatgaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgt |
621 |
Q |
| |
|
|||||||||||| |||||||||| || |||||| | ||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
37310597 |
gatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagctgt |
37310521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 548 - 621
Target Start/End: Complemental strand, 22514553 - 22514480
Alignment:
| Q |
548 |
gaagaagtcctgactgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgt |
621 |
Q |
| |
|
||||||||| | |||||||| || |||||| | ||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
22514553 |
gaagaagtcgtcactgatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagctgt |
22514480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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