View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710R-Insertion-5 (Length: 571)
Name: NF4710R-Insertion-5
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710R-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Original strand, 37405577 - 37406139
Alignment:
| Q |
9 |
caatcctaagagccaagggaatgttgagagtccacataatatgaaaagtgacttgaaaatatgttcatataagtgtacaacacaaatttgaaattagtcc |
108 |
Q |
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| T |
37405577 |
caatcctaagagccaagggaatgttgagagtccacataatatgaaaagtgacttgaaaatatgttcatataagtgtacaacacaaatttgaaattagtcc |
37405676 |
T |
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| Q |
109 |
caaaacaaattctaacatacatttcagtgtgtctttgtgcctacaaatctgcattataaatatcttgatgctgcatgcatgctatctgggctcacactgc |
208 |
Q |
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| T |
37405677 |
caaaacaaattctaacatacatttcagtgtgtctttgtgcctacaaatctgcattataaatatcttgatgctgcatgcatgctatctgggctcacactgc |
37405776 |
T |
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| Q |
209 |
aaacaatggaagttacatccaaatacagaagatacaaaaagggtgatttatctcctacaaacactactgtgcatgtttgcaatgcttgcagaaacatttg |
308 |
Q |
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| T |
37405777 |
aaacaatggaagttacatccaaatacagaagatacaaaaagggtgatttatctcctacaaacactactgtgcatgtttgcaatgcttgcagaaacatttg |
37405876 |
T |
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| Q |
309 |
cagttctcatcaccaaagtggagaaacaaaagcaccctgcagaggttgttgttgctttctatgtaatatttgtaattcatctttggaacatgggaaatca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37405877 |
cagttctcatcaccaaagtggagaaacaaaagcaccctgcagaggttgttgttgctttctatgtaatatttgtaattcagctttggaacatgggaaatca |
37405976 |
T |
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| Q |
409 |
agggaaaactgcctggttggttccgtgnnnnnnntcggaagcaaattgttcaaacttgacaattcaaataaaaatggaaattttcttggttggtcatcat |
508 |
Q |
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| T |
37405977 |
agggaaaactgcctggttggttcggtgaaaaaaatcggaagcaaattgttcaaacttgacaattcaaataaaaatggaaattttcttggttggtcatcat |
37406076 |
T |
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| Q |
509 |
caccatctccttcaattgcattcccctcatcttttccaagaagatataacaagcgtgccgttc |
571 |
Q |
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| T |
37406077 |
caccatctccttcaattgcatttccctcatcttttccaagaagatataacaagcgtgccgttc |
37406139 |
T |
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