View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710R-Insertion-6 (Length: 540)
Name: NF4710R-Insertion-6
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 51943829 - 51944041
Alignment:
| Q |
9 |
accttctaaataggtaaagatcactacttaccagtgacgaatctacttaggcgtgagatctatcaccgtttggaagctaacatcaatatatcgatgttgg |
108 |
Q |
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| T |
51943829 |
accttctaaataggtaaagatcactacttaccagtgacgaatctacttaggcgtgagatctattaccgtttggaagctaacatcaatatatcgatgttgg |
51943928 |
T |
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| Q |
109 |
atgaagatttaaagtaatgccgatggaaattctagagcagtagtaacttcaaagacaaaataggaaaatacatgcatatgattttcttttgacaaaaata |
208 |
Q |
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| T |
51943929 |
atgaagatttaaagtaatgccgatggaaattctagagcagtagtaacttcaaagacaaaataggaaaatacatgcatatgattttcttttgacaaaa--a |
51944026 |
T |
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| Q |
209 |
atgcatgcatatgat |
223 |
Q |
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|| |||||||||||| |
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| T |
51944027 |
atacatgcatatgat |
51944041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 51943999 - 51944118
Alignment:
| Q |
212 |
catgcatatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51943999 |
catgcatatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattac |
51944098 |
T |
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| Q |
312 |
ttcagaaccccttttacatg |
331 |
Q |
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| T |
51944099 |
ttcagaaccccttttacatg |
51944118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 540
Target Start/End: Original strand, 51944254 - 51944318
Alignment:
| Q |
475 |
aaatatcatgtgacatttgtcaatcacaataatataaatgtataaaaagacaaaaaattatagttt |
540 |
Q |
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| T |
51944254 |
aaatattatgtgatatttgtcaatcacaatattacaaatgtat-aaaagacaaaaaattatagttt |
51944318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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