View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710R-Insertion-7 (Length: 515)
Name: NF4710R-Insertion-7
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710R-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 493
Target Start/End: Complemental strand, 734337 - 733852
Alignment:
| Q |
15 |
accaaaacgttagactacttattattttcgtttacttnnnnnnncgatcaacttattatt-------acttgaaaagcaatctgcttcttgaagttatgc |
107 |
Q |
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| T |
734337 |
accaaaacgtcagactacttattattttcgtttacttaaaaaaacgatcaacttattatttttgtctacttgaaaagcaatctgcttcttgaagttatgg |
734238 |
T |
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| Q |
108 |
attcagaacttttgcagctgaatttaaacattcctttggcttccagcttcttgcttgagaatgcattttccaatcccatcacaaactgaacactcttctg |
207 |
Q |
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| T |
734237 |
attcagaacttttgcagctgaatttaaacattcctttggcttccagcttcttgcttgagaatgcattttccaatcccatcacaaactgaacactcttctg |
734138 |
T |
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| Q |
208 |
catcaccagctccatgctttaagcaaccattaatcctatcattcacaatatcctgcaacataacaagattgtttcaatttcaaaatgaaagaaacaatgt |
307 |
Q |
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| T |
734137 |
catcaccagctccatgctttaagcaaccattaatcctatcattcacaatatcctgcaacacaacaagattgtttcaagttcaaaatgaaagaaacaatgt |
734038 |
T |
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| Q |
308 |
aaaatacatcggttattcggtactttagagcgtgtttggtcgacatgttaaaaagggacacaacagcgtaggagttcataattatgttatggtggctcac |
407 |
Q |
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| T |
734037 |
aaaatacatcggttattcggtactttagagcgtgtttggtcgacatgttaaaaagggacacaacagcgtaggagttcataattatgttatggtggctcac |
733938 |
T |
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| Q |
408 |
tgtgatttcgacaaactcactgtgttaccaaacaagcactaattcgtctccgaataggtgagttaatgtaaaaatgaaataaatta |
493 |
Q |
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| T |
733937 |
tgtgatttcgacaaactcactgtgttaccaaacaagcactaattcgtctctgaataggtgagttaatgtaaaaatgaaataaatta |
733852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 168 - 371
Target Start/End: Complemental strand, 728041 - 727838
Alignment:
| Q |
168 |
atgcattttccaatcccatcacaaactgaacactcttctgcatcaccagctccatgctttaagcaaccattaatcctatcattcacaatatcctgcaaca |
267 |
Q |
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| T |
728041 |
atgcacttcccagtcccagcacaaactgaacactcatctgcatctccagctacatgctttaagcaataattgatcctatcattcacaacatcctgcaaca |
727942 |
T |
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| Q |
268 |
taacaagattgtttcaatttcaaaatgaaagaaacaatgtaaaatacatcggttattcggtactttagagcgtgtttggtcgacatgttaaaaagggaca |
367 |
Q |
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| T |
727941 |
caacaaggttgtttcaagttcaaataggcagacatgatgcaaaatagatccgttatttggtattttagattgtgtttgatcaacgtgttaaaaagggaca |
727842 |
T |
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| Q |
368 |
caac |
371 |
Q |
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|||| |
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| T |
727841 |
caac |
727838 |
T |
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Back To:
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