View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710R-Insertion-8 (Length: 432)
Name: NF4710R-Insertion-8
Description: NF4710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710R-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 34261180 - 34261603
Alignment:
| Q |
9 |
gttttctcaaactcaacaaactcattgtcagagtgcatgttagaattgacggtatatttgacagaattacagcgtatcactgtgattttgacaaaaaagt |
108 |
Q |
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| T |
34261180 |
gttttgtcaaactcaacaaactcattgtcagagtgcatgtttgagttgacggtatatttgacagaattacagcgtgtcactgtgaatttgacaaaaaagt |
34261279 |
T |
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| Q |
109 |
tggcatcaacacagttactgtgtcatcttgatttcgtcaaactcaatgtgatttcaaacatatatactaaattcttcgattagaagagagagtgactaac |
208 |
Q |
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| T |
34261280 |
tggcatcaacacagttacagtgtcatcctgatttcgtcaaactcactgtgatttcaaacatatatactaaattcttcgattagaagagagagtgactaac |
34261379 |
T |
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| Q |
209 |
atatggaggaagataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctatgaacattctcttcatgtcttagcttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34261380 |
atatggaggaagataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctgtgaacattctcttcatgtcttagcttc |
34261479 |
T |
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| Q |
309 |
ctcttcaacttatctacctgaaaccaaagctttgaaaacatcactattttgtatgaagaaaataacaaaaaatttcttattcatttgagtgaagattcaa |
408 |
Q |
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| T |
34261480 |
ctcttcaacttatctacctgaaaccaaagctttcaaaacatcactattttgtatgaagaaaataacacaaaaattcttattcatttgagtgaagattcaa |
34261579 |
T |
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| Q |
409 |
agtacatcttgtaacaatgcaatc |
432 |
Q |
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| T |
34261580 |
agtacatcttgtaacaatgcaatc |
34261603 |
T |
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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 6565503 - 6565394
Alignment:
| Q |
219 |
agataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctatgaacattctcttcatgtcttagcttcctcttcaact |
318 |
Q |
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| T |
6565503 |
agataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaact |
6565404 |
T |
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| Q |
319 |
tatctacctg |
328 |
Q |
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| T |
6565403 |
tatcaacctg |
6565394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 331
Target Start/End: Original strand, 46641638 - 46641766
Alignment:
| Q |
203 |
actaacatatggaggaagataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctatgaacattctcttcatgtctt |
302 |
Q |
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| T |
46641638 |
actaacatagggagggagataaggaggaagacgaggtaaggctcccaaaggcctattcaaagctctttccaatgccttgtgaatgttctcttcatgccta |
46641737 |
T |
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| Q |
303 |
agcttcctcttcaacttatctacctgaaa |
331 |
Q |
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| T |
46641738 |
agcttcttcttcaacctgtcaacctgaaa |
46641766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 6229040 - 6228987
Alignment:
| Q |
203 |
actaacatatggaggaagataaggaggaagacgaggcaaagatcctaaaggtct |
256 |
Q |
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| T |
6229040 |
actaacataaggaggtaggtaaggaggaagtcgaggtaaagctcctaaaggtct |
6228987 |
T |
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