View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_high_1 (Length: 551)
Name: NF4710_high_1
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 35937222 - 35936829
Alignment:
| Q |
19 |
agtggttacgtttccatccactaatttggtcgcgttggtttggaaattaagtaaaactttgattgtaannnnnnncttgagtctata-------gtatta |
111 |
Q |
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| T |
35937222 |
agtggttacgtttccatccactaatttggtcgcgttggtttggaaattaagtaaaactttgattgtaatttttttcttgagtctatactctatagtatta |
35937123 |
T |
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| Q |
112 |
cgaagttggttgggtttgcatagtttttcgttaatgatagctgggcatagttgattgaaaattaatttctttgtaattgttgtttttaacttctttttt- |
210 |
Q |
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| T |
35937122 |
cgtagttggttgggtttgcatagtttttcgttaatgatagctgggcatagttgattgaaatttaatttctttgtaattgttgtttttaactttttttttt |
35937023 |
T |
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| Q |
211 |
-cgttcaaaattcacattttaatgttattaaacggaaaatgtagtgttcgaacccaaactcttacaaactgcaaagttaatgtcaactgaactatgttca |
309 |
Q |
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| T |
35937022 |
tcgttcaaaattcacattttaatgttattaaacggaaaatgtagtgttcgaacccaaacccttacaaactgcaaagttaatgtcaactgaactatgttca |
35936923 |
T |
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| Q |
310 |
tgggttcatatgattgctgtttttaatctttataaagaacttttcaaataaaaaattattaaaatgacatcacattactactagattaaattaa |
403 |
Q |
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| T |
35936922 |
tgggttcatgtgattgcagtttttaatctttataaagaacttttcaaataaaaaattattaaaatgacatcacattactactagattaaattaa |
35936829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 395 - 541
Target Start/End: Complemental strand, 35936537 - 35936391
Alignment:
| Q |
395 |
ttaaattaattaaggcgaaagttatttttaattcaaattagtccaccaaaattaacatcaaagaaaatcgaatatcttgagagaaacacattctgaagtc |
494 |
Q |
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| T |
35936537 |
ttaaattaattaaggggaaagttatttttaattcaaattaacccaccaaaattaacatcaaagaaaatcgaatatcttaagagaaacacattctgaagtc |
35936438 |
T |
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| Q |
495 |
caaaaccaacacaacaagattgtgaactaacgctcgatgaacctttg |
541 |
Q |
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| T |
35936437 |
caaaaccaacacaacaagattgtgaactaacgctcgatgaacctttg |
35936391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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