View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_high_2 (Length: 435)
Name: NF4710_high_2
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 196 - 425
Target Start/End: Complemental strand, 15192950 - 15192720
Alignment:
| Q |
196 |
tttgataaactaaccgcaacacataaaaatttatttaaactaattaaatattgaacctattactaaatacatagaaaaaattcatttattcgtcaatgta |
295 |
Q |
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| T |
15192950 |
tttgataaactaaccgcaacacataattatttatttaaactaattaactatttaacctgttactaaatacatagaaaaaacttatttattcgtcaatgtg |
15192851 |
T |
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| Q |
296 |
catcatctaaatgggagatttaaactccaaccactgcatcctactcaagcgtccccgccttannnnnnnnaaaggaa--tctataattgaaaactacaat |
393 |
Q |
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| T |
15192850 |
catcatctaaattggagattcaaactccaaccaatacatcctactcaagcgtccccgcctta-tttttttaaaggaatctctataattgaaaattacaat |
15192752 |
T |
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| Q |
394 |
tttattaataattcatttaacttcaacctatg |
425 |
Q |
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| T |
15192751 |
tttattaataattcatttaacttcaacctatg |
15192720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 15193008 - 15192968
Alignment:
| Q |
60 |
ctgtccactccgtatcaagttgtataataccctattcattg |
100 |
Q |
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| T |
15193008 |
ctgtccactccgtatcaaattgtataataccctactcattg |
15192968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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