View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_high_6 (Length: 316)
Name: NF4710_high_6
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 41656865 - 41657128
Alignment:
| Q |
36 |
ctaacacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagct-agatgagacgttgg |
134 |
Q |
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| T |
41656865 |
ctaatacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagcttagacgagacgttgg |
41656964 |
T |
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| Q |
135 |
tggcgtcctttt-ttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaacatgcatagcatccaaagttagaacaagga |
233 |
Q |
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| T |
41656965 |
tggcaacctttttttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaacatgcatagcatcgaaagttagaacaagga |
41657064 |
T |
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| Q |
234 |
cctatgaacaagtaaccatccccataagcatg-cccagtcacaaataaaataacaaaccatttc |
296 |
Q |
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| T |
41657065 |
cctatgaacaagtaaccatccccacaagcatgccccagtcacaaataaaataacaaaccatttc |
41657128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 36 - 256
Target Start/End: Original strand, 41665627 - 41665847
Alignment:
| Q |
36 |
ctaacacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagctagatgagacgttggt |
135 |
Q |
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| T |
41665627 |
ctaacacaaactttttgttggttagaaacttcgaatagcgctcttgatggaccattgatatgaaatgaaagttgtcaaaggagctagacgaggcgttggt |
41665726 |
T |
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| Q |
136 |
ggcgtccttttttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaacatgcatagcatccaaagttagaacaaggacc |
235 |
Q |
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| T |
41665727 |
ggcaaccttttttctctttgctttgttttgtgttgccatttgttcctaccaaaacaatcaacaacaaacatgcatagtatccaaagttagaacaaggacc |
41665826 |
T |
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| Q |
236 |
tatgaacaagtaaccatcccc |
256 |
Q |
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| T |
41665827 |
tatgaacaagtaaccatcccc |
41665847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 41706844 - 41707007
Alignment:
| Q |
40 |
cacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagctagatgagacgttggtggcg |
139 |
Q |
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| T |
41706844 |
cacaaactttttgttggccagaaactcagaatagcgctcttgatgaaccgatgatgtgaagtggaagttgtcaaagttgctaaatgatgggttggtggca |
41706943 |
T |
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| Q |
140 |
tccttttttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaa |
203 |
Q |
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| T |
41706944 |
accttttttctctttgctgtgtattgtgttgccatttgttcctatagaaacaatcaacaacaaa |
41707007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 41716647 - 41716810
Alignment:
| Q |
40 |
cacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagctagatgagacgttggtggcg |
139 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| || |||||||| |||||||| |||| ||||| |
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| T |
41716647 |
cacaaactttttgttggccagaaactcagaataacgcttttgatgaaccaatgatgtgaagtggaatttgtcaaagtcactagatgatgcgttcgtggca |
41716746 |
T |
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| Q |
140 |
tccttttttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaa |
203 |
Q |
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|||||| |||||| || |||||| |||||||||||||||| ||||||| |||| |||||| |
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| T |
41716747 |
aactttttcctctttggttcgttttgtgttgccatttgttcctataaaaacaatcaacaacaaa |
41716810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 41648834 - 41648882
Alignment:
| Q |
143 |
ttttttatctttgctttgttttggcttgccatttgttcctacaaaaaca |
191 |
Q |
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| T |
41648834 |
ttttttctctttgctttgttttgagttgtcatttgtccctacaaaaaca |
41648882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 2440240 - 2440045
Alignment:
| Q |
36 |
ctaacacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatgaagtgaaaattgtcaaaagagctagatgagacgttggt |
135 |
Q |
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||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||||| |
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| T |
2440240 |
ctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatgaagcgcaaactgtcaaatgagctagatgaggtgttggc |
2440141 |
T |
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| Q |
136 |
ggcgtccttttttatctttgctttgttttggcttgccatttgttcctacaaaaacagtcaagaacaaacatgcatagcatccaaagttagaacaag |
231 |
Q |
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| T |
2440140 |
gataacccttttcctctttgcattgttttgttttgccatttgttcctacaaaaacagtcaacagcaaacatgcatagtatccaaagttataacaag |
2440045 |
T |
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