View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_low_11 (Length: 220)
Name: NF4710_low_11
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_low_11 |
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| [»] chr7 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45271729 - 45271510
Alignment:
| Q |
1 |
tgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45271729 |
tgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaagaaaaatggtgccaagatggctcttgatga |
45271630 |
T |
|
| Q |
101 |
ctgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45271629 |
ctgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgat |
45271530 |
T |
|
| Q |
201 |
atgaggaattggttgagtgc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
45271529 |
atgaggaattggttgagtgc |
45271510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45275262 - 45275043
Alignment:
| Q |
1 |
tgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatga |
100 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275262 |
tgaaggcagccactgacaatgtcatgaacgcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatga |
45275163 |
T |
|
| Q |
101 |
ctgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgat |
200 |
Q |
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| T |
45275162 |
ctgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctgat |
45275063 |
T |
|
| Q |
201 |
atgaggaattggttgagtgc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
45275062 |
atgaggaattggttgagtgc |
45275043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45283503 - 45283284
Alignment:
| Q |
1 |
tgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatga |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45283503 |
tgaaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatga |
45283404 |
T |
|
| Q |
101 |
ctgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
45283403 |
ctgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgctgat |
45283304 |
T |
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| Q |
201 |
atgaggaattggttgagtgc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
45283303 |
atgaggaattggttgagtgc |
45283284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 45294889 - 45294672
Alignment:
| Q |
3 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgact |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
45294889 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45294790 |
T |
|
| Q |
103 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
45294789 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatat |
45294690 |
T |
|
| Q |
203 |
gaggaattggttgagtgc |
220 |
Q |
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|||||||||||||||||| |
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| T |
45294689 |
gaggaattggttgagtgc |
45294672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 45303849 - 45303632
Alignment:
| Q |
3 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgact |
102 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
45303849 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45303750 |
T |
|
| Q |
103 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
45303749 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatat |
45303650 |
T |
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| Q |
203 |
gaggaattggttgagtgc |
220 |
Q |
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|||||||||||||||||| |
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| T |
45303649 |
gaggaattggttgagtgc |
45303632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 38588727 - 38588663
Alignment:
| Q |
156 |
gttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgc |
220 |
Q |
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||||| || |||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| |
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| T |
38588727 |
gttcgcgataacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgc |
38588663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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