View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_low_4 (Length: 356)
Name: NF4710_low_4
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 44630372 - 44630177
Alignment:
| Q |
7 |
attcaaaaatcaaatcttcacacattttcttcaccttttccaattctttagaagaatcactaccataaataagagggaagaagtaattcaccaattacat |
106 |
Q |
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| T |
44630372 |
attcaaaaatcaaatcttcacacgttttcttcaccttttccaattatttagaagaatcactaccataaataagagggaagaagtaattcagcaattgcat |
44630273 |
T |
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| Q |
107 |
tttatatctaggatccaaaacagcccctattgccatcaccccattaatcaaaccccaatacttatcaaacttcacaatcatatctcctgccatatt |
202 |
Q |
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| T |
44630272 |
tttatatctaggatccaaaacagcccctattgccatcaccccattaatcaaaccccaatacttgtcaaacttcacaatcatatctcctgccatatt |
44630177 |
T |
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Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 23943373 - 23943178
Alignment:
| Q |
7 |
attcaaaaatcaaatcttcacacattttcttcaccttttccaattctttagaagaatcactaccataaataagagggaagaagtaattcaccaattacat |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| | | |
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| T |
23943373 |
attcaaaaatcatatcttcacacattttcttcacctttttcaaatctttagaagaatcactaccataaataagagggaagaagtaatttagcaattgcgt |
23943274 |
T |
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| Q |
107 |
tttatatctaggatccaaaacagcccctattgccatcaccccattaatcaaaccccaatacttatcaaacttcacaatcatatctcctgccatatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
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| T |
23943273 |
tttatatctaggatccaaaacagcccctattgccatcaccccattaatcaaacctcaatacttgtcaaacttcacaatcatatctccttccatatt |
23943178 |
T |
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