View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4710_low_5 (Length: 350)
Name: NF4710_low_5
Description: NF4710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4710_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 43842717 - 43843035
Alignment:
| Q |
16 |
acaatcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaagaagagaaaaca |
115 |
Q |
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| T |
43842717 |
acaatcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaagaagagaaaaca |
43842816 |
T |
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| Q |
116 |
atggctttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacccaaaccaaagaagaag |
215 |
Q |
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| T |
43842817 |
atgactttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacgcaaaccaaagaagaag |
43842916 |
T |
|
| Q |
216 |
aagattcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattctaatgtagccctaaaagatcattattattcttcaagcagcaataa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43842917 |
aagattcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattctaatgtagccctaaaagatcgttattattcttcaagcagcaataa |
43843016 |
T |
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| Q |
316 |
gaaaagctcacaagaagaa |
334 |
Q |
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| T |
43843017 |
gaaaagctcacaagaagaa |
43843035 |
T |
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