View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4711-Insertion-2 (Length: 965)
Name: NF4711-Insertion-2
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 420 - 939
Target Start/End: Complemental strand, 49164514 - 49163997
Alignment:
| Q |
420 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
519 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164514 |
tagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
49164415 |
T |
|
| Q |
520 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164414 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
49164315 |
T |
|
| Q |
620 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgacattgaaacag |
719 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49164314 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacag |
49164215 |
T |
|
| Q |
720 |
caccatgtgaccatgatctaatgaataaatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttccca |
819 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164214 |
caccatgtgaccatgatctaatgaat-aatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttccca |
49164116 |
T |
|
| Q |
820 |
ttctttgacatcggaggtcttgagaaacattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagtacaattgaaatt |
919 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
49164115 |
ttctttgacatcgggagtcttgagaaacattggctttgataaatcaccgatatatttctcagtgaaagcatttggaattctctgcagtac-attgaaatt |
49164017 |
T |
|
| Q |
920 |
tatgttagcatgcatagaaa |
939 |
Q |
| |
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|||||||||||||||||||| |
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| T |
49164016 |
tatgttagcatgcatagaaa |
49163997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 49164932 - 49164566
Alignment:
| Q |
8 |
gaagggtgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacatgctggattttcattttgtaacaaagttagaaaatgtagta |
107 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164932 |
gaagggcgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacatgctggattttcattttgtaacaaagttagaaaatgtagta |
49164833 |
T |
|
| Q |
108 |
actaattaagatgtagattagcttnnnnnnngataataaacaatcttaacataaaaaattgaggctgttcaaagactcaccatgtattgattaacataag |
207 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164832 |
actaattaagatgtagattagcttaaaaaaagataataaacaatcttaacataaaaaattgaggctgttcaaagactcaccatgtattgattaacataag |
49164733 |
T |
|
| Q |
208 |
aatatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164732 |
aatatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttg |
49164633 |
T |
|
| Q |
308 |
accatgcttcacattcaggcatttagtggt------attctcttctgagaaattgaatatggtatgt |
368 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
49164632 |
accatgcttcacattcaggcatttagtggtagaatcaatctcttctgagaaattgaatatggtatgt |
49164566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 642 - 770
Target Start/End: Complemental strand, 12880920 - 12880793
Alignment:
| Q |
642 |
aacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgacattgaaacagcaccatgtgaccatgatctaat |
741 |
Q |
| |
|
|||| ||||||| |||||||||||||||| || ||| ||||||||||||||||| || |||| | | ||||||||| | |||||| ||||| |||||| |
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| T |
12880920 |
aacatgatattcaatttcaaaagtactctggtaaaatatgtaaacctcaaaatgtgatatttttttatattgaaacaccgtcatgtgtccatggtctaat |
12880821 |
T |
|
| Q |
742 |
gaataaatgtgtagcaaattccttccaac |
770 |
Q |
| |
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|||| || ||||||||||||||||||||| |
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| T |
12880820 |
gaat-aacgtgtagcaaattccttccaac |
12880793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
| Q |
490 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
544 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| |
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| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
12874077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 689 - 794
Target Start/End: Complemental strand, 12873905 - 12873801
Alignment:
| Q |
689 |
caaaatgagaggttttctgacattgaaacagcaccatgtgaccatgatctaatgaataaatgtgtagcaaattccttccaacccctttgaatccaaatat |
788 |
Q |
| |
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||||||||||| ||| | | ||||||| | |||||||| |||||||||| ||||| ||| |||||||||||| ||||||||| |||||| |||||||| |
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| T |
12873905 |
caaaatgagagttttcttcatattgaaataataccatgtgcccatgatctagtgaat-aatatgtagcaaattctttccaacccttttgaaaccaaatat |
12873807 |
T |
|
| Q |
789 |
caccat |
794 |
Q |
| |
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| |||| |
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| T |
12873806 |
ccccat |
12873801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 420 - 907
Target Start/End: Complemental strand, 43750980 - 43750494
Alignment:
| Q |
420 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
519 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||| |||| |||||| || |
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| T |
43750980 |
tagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgcca |
43750881 |
T |
|
| Q |
520 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
619 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||| | | ||||| ||||||||| |||||| | ||| ||| |
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| T |
43750880 |
attctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttct |
43750781 |
T |
|
| Q |
620 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgacattgaaacag |
719 |
Q |
| |
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| |||||||||||||| |||||||| ||||||| ||||| ||||||||||||| ||| ||||||| || ||||||||| ||||| | | ||||||||| |
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| T |
43750780 |
gctcatgttgattatttccatcaacgtgatattcaatttccaaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacat |
43750681 |
T |
|
| Q |
720 |
caccatgtgaccatgatctaatgaataaatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttccca |
819 |
Q |
| |
|
|| |||||| |||||||||| |||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43750680 |
cagcatgtgtccatgatctatagaat-aatgtgtagcaaattcattccatcccttgtgaatccaaatatcaccatcctttttagtcaaatgtacttccca |
43750582 |
T |
|
| Q |
820 |
ttctttgacatcggaggtcttgagaaacattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagt |
907 |
Q |
| |
|
|| |||| |||| | ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
43750581 |
ttttttgtcatctggagtcttgagaaacattgggtttgacaaatcaccactatatttcttagtgaaagcatctggaattttctgcagt |
43750494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 158 - 339
Target Start/End: Complemental strand, 43751245 - 43751067
Alignment:
| Q |
158 |
ataaaaaattgaggctgttcaaagactcaccatgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagtttttt |
257 |
Q |
| |
|
|||||||| ||| ||| || |||||||||||||||||| |||| |||| ||||||||||||| | ||||||||||||||||||||| || || |||||| |
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|
| T |
43751245 |
ataaaaaaatgaagctattgaaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaatttttt |
43751146 |
T |
|
| Q |
258 |
gctttgtttaaagcttcaacaattttagcagttgaattcctctgctcttgaccatgcttcacattcaggcatttagtggtat |
339 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||| || |||||||| || |||||||| ||||||| |||||||| |
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|
| T |
43751145 |
gctttgtttaaagcttcagcaatttttgaagttgaattcttcggctcttgatca---ttcacattaaggcattcagtggtat |
43751067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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