View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4711-Insertion-4 (Length: 930)

Name: NF4711-Insertion-4
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4711-Insertion-4
NF4711-Insertion-4
[»] chr2 (4 HSPs)
chr2 (23-730)||(38365307-38366024)
chr2 (269-444)||(38371585-38371766)
chr2 (845-916)||(38366167-38366236)
chr2 (786-845)||(38366080-38366138)
[»] chr5 (1 HSPs)
chr5 (500-553)||(33311883-33311936)


Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 23 - 730
Target Start/End: Original strand, 38365307 - 38366024
Alignment:
Q  23 ggttagacacacgggcactaagcacaacactgacacattatgatattagtaatatatttagaaagtgagagtgacatagttcatattttaaagctagagt 122  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38365307 ggttagacacacgggcactaaacacgacactgacacattatgatattagtaatatatttagaaagtgagagtgacatagttcatattttaaagctagagt 38365406  T
Q  123 tcaaatctcaaagatagttgcaaaatgatcgttaataccacggttattagtaaaacnnnnnnn-ccgatataaaaagaatactctactataagtgctata 221  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||    
T  38365407 tcaaatttcaaagatagttgcaaaatgatggttaataccacggttattaataaaacttttttttccgatataaaaagaatactctactataagtgctata 38365506  T
Q  222 cttaaaatttaattcatcgagtcttctcagccagttattatttagattttagaatttacctctgctaccgtctccttcagcctcgccgtaccaggtggcg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38365507 cttaaaatttaattcatcgagtcttctcagccagttattatttagattttagaatttacctctgctaccgtctccttcagcctcgccgtaccaggtggcg 38365606  T
Q  322 gttcccgggtgccaatgtgggtcgaagtgtacactgtgcttagactgcccccgagcaagtatgaagcataagcttaaaagaaacaagacggagacacggt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38365607 gttcccgggtgccaatgtgggtcgaagtgtacactgtgcttagactgcccccgagcaagtatgaagcataagcttaaaagaaacaagacggagacacggt 38365706  T
Q  422 ggtgcttcattctgattgaagacaaaacttaacgtgccgtcgtagatagttgac---------aagaagaaaacagttaaatgtgttaccgacactttga 512  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||||||||||| |||||||||||||    
T  38365707 ggtgcttcattctgattgaagacaaaacttaacgtgccgccgtagatagttgacaagaagaagaagaagaaaacagttaaatgtgtcaccgacactttga 38365806  T
Q  513 tgattgaagtggtagttttatttgtttcaagttttggttatgataccgttataggtattttagttattttatagtgcattgtgatgcaaggggtccatcc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38365807 tgattgaagtggtagttttatttgtttcaagttttggttatgatacccttataggtattttagttattttataatgcattgtgatgcaaggggtccatcc 38365906  T
Q  613 aatgaaatatctatgctgatttctttaccctaatgtatgaagtatatttactgagtgtgccactgtagtgggtcccattggcggttgaggcgttgaatcc 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38365907 aatgaaatatctatgctgatttctttaccctaatgtatgaagtatatttactgagtgtgccactgtagtgggtcccattggcggttgaggcgttgaatcc 38366006  T
Q  713 gcatgtgcaacagaaatg 730  Q
    |||||||||||| |||||    
T  38366007 gcatgtgcaacaaaaatg 38366024  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 269 - 444
Target Start/End: Original strand, 38371585 - 38371766
Alignment:
Q  269 tttagaatttacctctgctaccgtctccttcagcctcgccgtaccaggtggcggttcccgggtgccaatgtgggtcgaagtgtacactgtg------ctt 362  Q
    |||||||||||||| ||||||| || || |||||||||||||||||||||||||| || |||| ||||||||  || | ||| ||| || |      |||    
T  38371585 tttagaatttacctgtgctaccatcaccctcagcctcgccgtaccaggtggcggtgcctgggtaccaatgtgtatctaggtgaacattggggttagcctt 38371684  T
Q  363 agactgcccccgagcaagtatgaagcataagcttaaaagaaacaagacggagacacggtggtgcttcattctgattgaagac 444  Q
    || ||| ||| | |||||||||||||||| |||||||||||||||   ||||| ||||||||||||||||||||||||||||    
T  38371685 aggctgtccctgtgcaagtatgaagcataggcttaaaagaaacaaagtggagaaacggtggtgcttcattctgattgaagac 38371766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 845 - 916
Target Start/End: Original strand, 38366167 - 38366236
Alignment:
Q  845 actgggacgtctcaaggaaaatgtatgggggctgaatgaatgaagaaggacgtgacacaatttcctcaaact 916  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  38366167 actgggacgtctcaaggaaaatgtatgggg-ctgaatgaatgaagaaggacgtgacacaa-ttcctcaaact 38366236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 786 - 845
Target Start/End: Original strand, 38366080 - 38366138
Alignment:
Q  786 ataccgttaatcaagggaaataatttattggcaagctatacatttcttcatcctctcata 845  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38366080 ataccgttaatcaagggaaataatt-attggcaagctatacatttcttcatcctctcata 38366138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 33311883 - 33311936
Alignment:
Q  500 accgacactttgatgattgaagtggtagttttatttgtttcaagttttggttat 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33311883 accgacactttgatgattgaagtggtagttttatttgtttcaagttttggttat 33311936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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