View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4711-Insertion-5 (Length: 635)
Name: NF4711-Insertion-5
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 635
Target Start/End: Original strand, 5911035 - 5911664
Alignment:
| Q |
14 |
atcatccaatcttgatggatttgtgtttcatgctatattatttcagaaaaatgagaatactatgaacatggatgatagtaatagatacagtatgtaactt |
113 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5911035 |
atcatccaatcttgatgtatgtgtgtttcatgctatattatttcagaaaaatgagaatactacgaacatggatgatagtaatagatacagtatgtaactt |
5911134 |
T |
|
| Q |
114 |
gttgaagtttttatgattcccaattccaatttttcctcagcgttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaacta |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5911135 |
gttgaagtttttatgattcccaattccaatttttcctcagcgttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaacta |
5911234 |
T |
|
| Q |
214 |
ctggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcag |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5911235 |
ctggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcag |
5911334 |
T |
|
| Q |
314 |
tagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5911335 |
tagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacctaacggtggagtagaaaaattcaaatctgctgattactca |
5911434 |
T |
|
| Q |
414 |
aacgtaagttgtttccatttcaatttcaattcctttgattaatgtcaacatt-------atagtttaaaatggttaaatttggctttgttttttaacacc |
506 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |||| | |||||| ||||| ||| || | | | ||||||||||||||||||||| |
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| T |
5911435 |
aacgtaagttgttcccatttcaatttcaattcctttgaataattttaacattatagtagatagtataagattggttgacttggctttgttttttaacacc |
5911534 |
T |
|
| Q |
507 |
cctt-ttctttattgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattattct-agt |
604 |
Q |
| |
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| || ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||| | ||| |
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| T |
5911535 |
ctttgttctttattatgcagtgcacccgcaaaccatcctgaga-ttttttgggttctgatatagttcttaggattttcattctgcaaaattattttaagt |
5911633 |
T |
|
| Q |
605 |
ttcctcctttcctttttcttgtcctccctcc |
635 |
Q |
| |
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|| ||||| |||||||||||||||||||||| |
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|
| T |
5911634 |
ttactcctctcctttttcttgtcctccctcc |
5911664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 167 - 622
Target Start/End: Original strand, 5917851 - 5918316
Alignment:
| Q |
167 |
tatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgt |
266 |
Q |
| |
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|||||||||| || | ||| ||| |||||||||||||||||||| |||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||| |
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| T |
5917851 |
tatctacgacaaatagtaatccagaaatcatgatttctttgcaattactggcttatttttgtgtttgacattttgcttctttctcttggcagaaaggtgt |
5917950 |
T |
|
| Q |
267 |
gtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagatg |
366 |
Q |
| |
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||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5917951 |
gtgaatgaactaatggagtctaaaggtggtaaaaagaagtctagcagtagtaattcctcctttttgtacgaagctcctctcggttacatcattgaagacg |
5918050 |
T |
|
| Q |
367 |
ttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagtt---gtttccatttcaatttcaattcctttgattaatgtcaaca |
463 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| |||||||||||||||||| || |||| |||||||||| |||||||| ||||||||| |||| |
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| T |
5918051 |
ttcgacccaacggtggcgtagaaaaattcaaatcacctgattactcaaacgtaatttcccatttcaatttcaattttaattccttcgattaatgttaaca |
5918150 |
T |
|
| Q |
464 |
t-------tatagtttaaaatggttaaatttggctttgttttttaacaccc-cttttctttattgtgcagtgcacccgcaaaccatcctgagannnnnnn |
555 |
Q |
| |
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| |||||| ||| || | ||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
5918151 |
ttatagtatatagtataagattggatgatttggctttgctttttgacacccttttttctttattatgcagtgcacccgcaaaccatcctgaga-ttttct |
5918249 |
T |
|
| Q |
556 |
gggttgtgatatagttcttaggtttttcattccgcaaaattattctagtttcctcctttcctttttc |
622 |
Q |
| |
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||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
5918250 |
gggcggtgatatagttcttaggtttttcattctgcaaaattattctactttcctccactcctttttc |
5918316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 635
Target Start/End: Complemental strand, 5903941 - 5903540
Alignment:
| Q |
240 |
tgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaag |
339 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903941 |
tgctttattctttttgcagaaagttgtgtgaatgaactaatggagtcaaaaggtggtaagaagaagtctagcagtagtagttcctcctttttgtacgaag |
5903842 |
T |
|
| Q |
340 |
ctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagtt---gtttccatttcaa |
436 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||| | |
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| T |
5903841 |
ctcctctcggttacatcattgaagacgttcgacccaacggtggcgtagaaaaattcaaatctgctgattactcaaacgtaatttctcattttaatttcta |
5903742 |
T |
|
| Q |
437 |
tttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggctttg-ttttttaacacccctttt-cttta---ttgtgcagtgcacc |
531 |
Q |
| |
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||| |||||||||||||||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||| |||| ||||| || ||||||||||| |
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|
| T |
5903741 |
ttttaattcctttgattaattttaacatcatagtataagattggatgatttggctttgtttttttaacaccctttttgctttatttttatgcagtgcacc |
5903642 |
T |
|
| Q |
532 |
cgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattattctagtttcctcctttcctttttcttgtcctcc |
631 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||||||| | |||| |||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
5903641 |
cgcaaaccatcctgaga-ttttctgggttctgatatagtttttaggtttataattctgcaaaattattc-agtgtcctcctctcctttttcttgtcctcc |
5903544 |
T |
|
| Q |
632 |
ctcc |
635 |
Q |
| |
|
|||| |
|
|
| T |
5903543 |
ctcc |
5903540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 204 - 635
Target Start/End: Complemental strand, 364079 - 363643
Alignment:
| Q |
204 |
tttgcaactactggcttaattttgtgattgacattctgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaaga |
303 |
Q |
| |
|
||||||| ||| |||||| ||||||| || ||||| || ||||||||||| ||| || ||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
364079 |
tttgcaattaccggcttatttttgtgttttacattttgatttattctttttccagtaa--agtgtgaatgaactaatggagtctaaaggtggtaagaaga |
363982 |
T |
|
| Q |
304 |
agtctagcagtagtagttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgc |
403 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
363981 |
agtctagcagtagtaattcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacctaatggtggagtagaaaaattcaaatcacc |
363882 |
T |
|
| Q |
404 |
tgattactcaaacgta--agtt----------gtttccatttcaatttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggct |
491 |
Q |
| |
|
|||||||||||||||| | || |||| |||||||||||||||||||||||||||||| |||||||| | | ||||| |||||||| |
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|
| T |
363881 |
tgattactcaaacgtaataatttcccatttcaatttcaatttcaatttcaattcctttgattaatgtctacattata----agattggtt-gatttggct |
363787 |
T |
|
| Q |
492 |
ttgttttttaacaccc-cttttctttattgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgc |
590 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| || |
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|
| T |
363786 |
ttgttttttaacacccttttttctttattatgcagtgcacccgcaaaccatcctgaca-ttttctgggttctgatatagtttgtaggtttttcattctgc |
363688 |
T |
|
| Q |
591 |
aaaattattctagtttcctcctttcctttttcttgtcctccctcc |
635 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
363687 |
aaaattattctagtttactcctctcctttttcttgtcctccctcc |
363643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 39903256 - 39903304
Alignment:
| Q |
57 |
cagaaaaatgagaatactatgaacatggatgatagtaatagatacagta |
105 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39903256 |
cagaaaaatgaaaatactacgaacatggatgatagtaatagatacagta |
39903304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 422
Target Start/End: Original strand, 3703 - 3863
Alignment:
| Q |
268 |
tgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagcagtagtagt------tcctcctttttgtacgaagctcctctcggttacatcattga |
361 |
Q |
| |
|
||||||| |||||||||| ||||| ||||| |||||||| || ||||||||| || || || || ||||||||||| ||||| |||| |||||| |
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|
| T |
3703 |
tgaatgagctaatggagtctaaaggaggtaaaaagaagtccagtagtagtagtaaatcatcatcattattctacgaagctcccctcggatacagcattga |
3802 |
T |
|
| Q |
362 |
agatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagt |
422 |
Q |
| |
|
||| |||| |||||||||||| | | || |||| ||| |||| |||||| ||||||||| |
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|
| T |
3803 |
agacattcgtcctaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
3863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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