View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4711-Insertion-6 (Length: 596)

Name: NF4711-Insertion-6
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4711-Insertion-6
NF4711-Insertion-6
[»] chr3 (8 HSPs)
chr3 (7-498)||(31719553-31720044)
chr3 (301-385)||(31011689-31011773)
chr3 (301-385)||(31709549-31709633)
chr3 (534-596)||(31720079-31720141)
chr3 (383-448)||(31712018-31712084)
chr3 (186-235)||(31012172-31012221)
chr3 (191-235)||(31709112-31709156)
chr3 (533-569)||(31719433-31719469)
[»] chr8 (1 HSPs)
chr8 (84-148)||(8935284-8935348)
[»] chr1 (1 HSPs)
chr1 (96-148)||(46767914-46767966)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Original strand, 31719553 - 31720044
Alignment:
Q  7 atacctgacagttgatataaatcattgctgcagcagatttattttgatattataatttattattaattgtatttggagctcaataaatgaacacaacaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719553 atacctgacagttgatataaatcattgctgcagcagatttattttgatattataatttattattaattgtatttggagctcaataaatgaacacaacaaa 31719652  T
Q  107 ttataactcataactagcgtagattctttcaacaaatttctccatgtgcatagtagctaaaagttgacactattgttaaaaatattagatggttactcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719653 ttataactcataactagcgtagattctttcaacaaatttctccatgtgcatagtagctaaaagttgacactattgttaaaaatattagatggttactcaa 31719752  T
Q  207 acatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaaacaagaaattcatgagatgaatatagacgtttaattgctgctat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719753 acatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaaacaagaaattcatgagatgaatatagacgtttaattgctgctat 31719852  T
Q  307 tcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagtcccacaccgttcaatagtgtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31719853 tcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagtcccacaccgttcaacagtgtt 31719952  T
Q  407 gtaaatatccctagatctattataaaggttaaattccttcagtacattaacaatgcctttctcggccctattcgttgggttgcaaaagggat 498  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719953 gtaaatatccatagatctattataaaggttaaattccttcagtacattaacaatgcctttctcggccctattcgttgggttgcaaaagggat 31720044  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 31011773 - 31011689
Alignment:
Q  301 tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt 385  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31011773 tgctattcatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt 31011689  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 31709549 - 31709633
Alignment:
Q  301 tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt 385  Q
    |||||| ||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31709549 tgctatacatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt 31709633  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 534 - 596
Target Start/End: Original strand, 31720079 - 31720141
Alignment:
Q  534 taaatgtgtagataatgatatagatcttttttgtcaaccctaatatatataagaaaattgttc 596  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31720079 taaatgtgtggataatgatatagatcttttttgtcaacccaaatatatataagaaaattgttc 31720141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 31712018 - 31712084
Alignment:
Q  383 agtcccacaccgttcaatagtgttgtaaatatcc-ctagatctattataaaggttaaattccttcag 448  Q
    ||||||||||||||||||||||| |||| |||||   ||||||||||||||||||||| ||||||||    
T  31712018 agtcccacaccgttcaatagtgtagtaagtatccaagagatctattataaaggttaaactccttcag 31712084  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 31012221 - 31012172
Alignment:
Q  186 aaatattagatggttactcaaacatttggagacataccattttgtcctac 235  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  31012221 aaattttagatggttactcaaacatttggagacatactgttttgtcctac 31012172  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 31709112 - 31709156
Alignment:
Q  191 ttagatggttactcaaacatttggagacataccattttgtcctac 235  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  31709112 ttagatggttactcaaacatttggagacatactgttttgtcctac 31709156  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 569
Target Start/End: Original strand, 31719433 - 31719469
Alignment:
Q  533 ttaaatgtgtagataatgatatagatcttttttgtca 569  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  31719433 ttaaatgtgtggataatgatatagattttttttgtca 31719469  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 8935348 - 8935284
Alignment:
Q  84 gctcaataaatgaacacaacaaattataactcataactagcgtagattctttcaacaaatttctc 148  Q
    ||||||||||||||||||||| ||||||| |  ||||||  |||||||||||| |||||||||||    
T  8935348 gctcaataaatgaacacaacacattataaattgtaactaatgtagattctttccacaaatttctc 8935284  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 46767966 - 46767914
Alignment:
Q  96 aacacaacaaattataactcataactagcgtagattctttcaacaaatttctc 148  Q
    |||||||||||||| || ||||||||  |||| |||||||| |||||||||||    
T  46767966 aacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctc 46767914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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