View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4711-Insertion-8 (Length: 423)
Name: NF4711-Insertion-8
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 2644254 - 2643855
Alignment:
| Q |
24 |
ccattatttgtgacaaaaacatgacattttttctttcttttgaacagattaggatgcaatgaacacaactttgctagcagaatggaatgtttcaaatgca |
123 |
Q |
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| T |
2644254 |
ccattatttgtgacaaaaacatgacattttttctttcttttgaacagattaggatgcaatgaacacaactttgctagcagaatggaatgtttcaaatgca |
2644155 |
T |
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| Q |
124 |
gcgcaccaagagacacctactagaaatgagattatccaagcnnnnnnngactagagatgctgcaagattttctttattagttattactatgggatgttaa |
223 |
Q |
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| T |
2644154 |
gcgcaccaagagacacctactagaaatgagattatccaagcaaaaaaagactagagatgctgcaagattttctttattagttattactatgggatgttaa |
2644055 |
T |
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| Q |
224 |
ggatttctaagaaggtggtccaaaatgctatgtttattagagaaaccaaatcccaattaggctcttctttagatttcccttcaaaactataacaatgttg |
323 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2644054 |
ggatttctaaaaaggtggtccaaaatgctatgtttattagagaaaccaaatcccaattaggctcttctttagatttccctttaaaactataacaatgttg |
2643955 |
T |
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| Q |
324 |
tttttgtgctttaaactattttaatttctttgatctttgtgttagagagttcatttattgtacggtgcgtggctttctttaatgaagattaatatctcct |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2643954 |
tttttgtgctttaaactattttaatttctttgatctttgtgttagagagttcatttattgtacggtgcgtggctttctttaatgaagattaatatctcct |
2643855 |
T |
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