View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4711-Insertion-9 (Length: 409)
Name: NF4711-Insertion-9
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 171 - 408
Target Start/End: Original strand, 43619154 - 43619392
Alignment:
| Q |
171 |
ctgaatgcattgtgtatatacaacatgttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaat |
270 |
Q |
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| T |
43619154 |
ctgaatgcattgtgtatatacaacatcttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaat |
43619253 |
T |
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| Q |
271 |
tacttaggaaacaagttaactaaccctaaaacaaactaaacaagctaagagttttgaattacaatttaacaatgtcatcttttaagggagcattctaatg |
370 |
Q |
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| T |
43619254 |
tacttaggaaacaagttaactaaccctaaaacaaactaaacaagttaagagttttgaattacaatttaacaatgtcatcttttaagggagcattctaatg |
43619353 |
T |
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| Q |
371 |
taccttagtcctt-aaaaaatattctaatataccttagg |
408 |
Q |
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| T |
43619354 |
taccttagtccttaaaaaaatattctaatataccttagg |
43619392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 43618989 - 43619088
Alignment:
| Q |
7 |
attaattaactcgtattatgtgagnnnnnnntttgtgtttttcaatgtcatgtatgttggtgaactaattgatctgggattttatgatttttgttttgtt |
106 |
Q |
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| T |
43618989 |
attaattaactcgtattatgtgagaaaaaaaattgtgtttttcaatgtcatgtatgttggtgaactaattgatctgggattttatgatttttgttttgtt |
43619088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 12198126 - 12198248
Alignment:
| Q |
185 |
tatatacaacatgttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaattacttaggaaacaa |
284 |
Q |
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| T |
12198126 |
tatatacaacatgttctagctatagcttgcattacaagtaaatgctaattgtctaactaactttctaaaaacaaggtaaag-tagttacttaggtagcaa |
12198224 |
T |
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| Q |
285 |
gttaactaaccctaaaacaaacta |
308 |
Q |
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| T |
12198225 |
ggtaactaaccctaaatcaaacta |
12198248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 25518733 - 25518801
Alignment:
| Q |
245 |
ttagctaaaaacaaggaaa-agttaattacttaggaaacaagttaactaaccctaaaacaaactaaacaa |
313 |
Q |
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| T |
25518733 |
ttagctaaaaacaaggaaatagttagttacttatgaaacaagc-aactagccctaaaacaaactaaacaa |
25518801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 31540114 - 31540078
Alignment:
| Q |
228 |
gctaactgtctaaccaattagctaaaaacaaggaaaa |
264 |
Q |
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| T |
31540114 |
gctaactgtctaaccaactagctaaaaacaaggaaaa |
31540078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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