View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4711_high_5 (Length: 287)
Name: NF4711_high_5
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 27713742 - 27713979
Alignment:
| Q |
35 |
atccaatgattgataaaatatgtgctggttgtgtagagtataccataaaggagcgctggttgaaatattaagggtgaaaatatcaacatgcatgtgagtt |
134 |
Q |
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| T |
27713742 |
atccaatgattgataaaatatgtgctggttgtgtagagtataccattaaggagcgctggttgaaatattaagggtgaaaatatcaacatgcatgtgagtt |
27713841 |
T |
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| Q |
135 |
cacttagtcatgccaagttttcaattgttgaatttgtttaatatcatggagcctcttaagtcaatggagttacaaatttttcttttcaagattcaaacga |
234 |
Q |
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| T |
27713842 |
cacttagtcatgccaagttttcaattgttgaatttgtttaatatcatcgagcctcttaagtcaatggagttagaaatttttcttttcaagattcaaacga |
27713941 |
T |
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| Q |
235 |
aggaaaaactcaatttgatttctattgaagagcttgtt |
272 |
Q |
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| T |
27713942 |
aggaaaaactcaatttgatttctattgaagagcttgtt |
27713979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27713732 - 27713674
Alignment:
| Q |
1 |
cttaatatttgctataccatatgctgtttccttgatccaatgattgataaaatatgtgc |
59 |
Q |
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| T |
27713732 |
cttaatatttgctataccatatgctgtttccttgatccaatgattgataaaatatgtgc |
27713674 |
T |
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