View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4711_high_9 (Length: 250)
Name: NF4711_high_9
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711_high_9 |
 |  |
|
| [»] scaffold0008 (1 HSPs) |
 |  |  |
|
| [»] scaffold0001 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2644628 - 2644859
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| || |||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
2644628 |
tttgttgaaattcgtgtattgcgtttaatttgttaacttttaattacttaaatgcataaatattaatggaatatttctattttagaattgcttaacatgt |
2644727 |
T |
 |
| Q |
101 |
gcccttagggtacaagttaacataatcctatttaaatagttatgaaagtgtagccatattcaaataactcctaaaagaagtcaaaaaagaggaattcaat |
200 |
Q |
| |
|
|| |||| |||||||||||||||| ||||||||| || ||| || || | | | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2644728 |
acctttagagtacaagttaacataaccctatttaagta-----caaa---tattcaaagt-atgtaactcctaaaagaagtcaagaaagaggaattcaat |
2644818 |
T |
 |
| Q |
201 |
aaagatatgattttatgtctacaaccccatcattgcctttg |
241 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2644819 |
aaagatatgattttatgcctacaaccccatcattgcctttg |
2644859 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 50685654 - 50685754
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| | || ||||||||||||||| ||||||||| |||||||||||| | ||| ||||||| |
|
|
| T |
50685654 |
atttaatttttttacttttaattaattgaatgcacaaaattcaagaaaatatttctatttttgaattgcttaaaatgtgcccttagagcacaggttaaca |
50685753 |
T |
 |
| Q |
123 |
t |
123 |
Q |
| |
|
| |
|
|
| T |
50685754 |
t |
50685754 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 53133541 - 53133625
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||| |||||||||| |||| || || |||||||||| ||| || || ||||||||||||||| |||| ||||||||||| |
|
|
| T |
53133541 |
ttttaatgagttgaatgcgcaaaattttataaaatatttcttcttttaggtttcttaacatgtgccctaagggcacaagttaaca |
53133625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 564139 - 564105
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacataa |
125 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
564139 |
cttaacatgtgccctaagggtacaagttaacataa |
564105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 22019522 - 22019554
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
22019522 |
cttaacatgtgcccttagggcacaagttaacat |
22019554 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 24940758 - 24940794
Alignment:
| Q |
86 |
gattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
24940758 |
gattgcttaacatgtgctcttagggaacaagttaaca |
24940794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 41350350 - 41350472
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| | |
|
|
| T |
41350350 |
tttgttaaaattcgtgtattgcatttaatttattaacttttaattagttgaatgcataaatattaatgaaatatttttatttttgatttgcttaacatat |
41350449 |
T |
 |
| Q |
101 |
gcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||| | |||||||||||| |
|
|
| T |
41350450 |
gcccttagagcacaagttaacat |
41350472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 42121381 - 42121481
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||||| || |||||| |||| ||||||| ||||| |||| ||| |||||| ||| | ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
42121381 |
atttaattttttcacttttcattaattgaatgtacaaaatttaagagaatgtttctacttttgggttgcttaacatgtgcccttagggcataagttaaca |
42121480 |
T |
 |
| Q |
123 |
t |
123 |
Q |
| |
|
| |
|
|
| T |
42121481 |
t |
42121481 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 39983214 - 39983252
Alignment:
| Q |
92 |
ttaacatgtgcccttagggtacaagttaacataatccta |
130 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39983214 |
ttaacatgtgcccttagggcacaagttaacattatccta |
39983252 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 37708544 - 37708444
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattt-taagattgcttaacatgtgcccttagggtacaagttaac |
121 |
Q |
| |
|
||||||||| || |||||| |||| ||||||||||||| |||| | ||| ||||||||| | || || |||||||| |||||||| || |||||||||| |
|
|
| T |
37708544 |
atttaatttttttacttttgattaattgaatgcacaaaatttaagggaatgtttctatttctgag-ttacttaacatctgcccttacggcacaagttaac |
37708446 |
T |
 |
| Q |
122 |
at |
123 |
Q |
| |
|
|| |
|
|
| T |
37708445 |
at |
37708444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 25119872 - 25119904
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
25119872 |
cttaacatgtgcccttagggcacaagttaacat |
25119904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2147994 - 2147885
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaactttta---attagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaaca |
97 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2147994 |
tttgttggaattcgtatattgcatttaatttgttaacttttagtaattagttgaatgcacaaatattaatgagatatttctattttgagattgcttaaca |
2147895 |
T |
 |
| Q |
98 |
tgtgccctta |
107 |
Q |
| |
|
|||||||||| |
|
|
| T |
2147894 |
tgtgccctta |
2147885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38824733 - 38824650
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaactttt-aattagttgaatgcacaaatattaatgaaatatttctatttt |
83 |
Q |
| |
|
||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38824733 |
tttgttggaattcatgtattgtatttaatttgttaactttttaattagttgaatgcacaattattaatgaaatatttctatttt |
38824650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 16612295 - 16612229
Alignment:
| Q |
9 |
aattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatt |
75 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
16612295 |
aatttgtgtattacatttaatttgttaacttttaattcgttaaatgcacaaatattaatggaatatt |
16612229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 5959997 - 5959945
Alignment:
| Q |
66 |
atgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtt |
118 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5959997 |
atgaaatatttctacttttagattccttaacatgtgcccttagggcacaagtt |
5959945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11323223 - 11323141
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt |
83 |
Q |
| |
|
||||||||||||| || ||| ||||||||| | |||||| ||||| ||||||||||||||||||| |||||| | |||||| |
|
|
| T |
11323223 |
tttgttgaaattcatgcattggatttaatttttcaactttgaattaattgaatgcacaaatattaaaaaaatatctttatttt |
11323141 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 24993638 - 24993739
Alignment:
| Q |
9 |
aattcgtgtattatatttaatttatt-aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta |
107 |
Q |
| |
|
|||| ||| |||| ||||||||| || |||||||||||| ||||| ||| |||| |||| |||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
24993638 |
aatttgtgcattaaatttaatttttttaacttttaattaattgaaagcataaattttaaggaaataattctatttttgagttgtttaacatgtgccctta |
24993737 |
T |
 |
| Q |
108 |
gg |
109 |
Q |
| |
|
|| |
|
|
| T |
24993738 |
gg |
24993739 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 25186260 - 25186311
Alignment:
| Q |
74 |
tttctattttaagattgcttaacatgtgcccttagggtacaagttaacataa |
125 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
25186260 |
tttctacttttagtttgcttaacatgtgcccttagggcacaagttatcataa |
25186311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 26014877 - 26014843
Alignment:
| Q |
89 |
tgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26014877 |
tgcttaacatgtgccctaagggtacaagttaacat |
26014843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 8114332 - 8114300
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
8114332 |
cttaacatgtgcccttagggcacaagttaacat |
8114300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2987597 - 2987490
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt |
100 |
Q |
| |
|
||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2987597 |
tttgttggaattcgcgtattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatgaaatatttctatttttgatttgcttaacatgt |
2987498 |
T |
 |
| Q |
101 |
gcccttag |
108 |
Q |
| |
|
| |||||| |
|
|
| T |
2987497 |
gtccttag |
2987490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 5225098 - 5224979
Alignment:
| Q |
4 |
gttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcc |
103 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||| | |||||||||||||| | |
|
|
| T |
5225098 |
gttggaattcgtgtattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatggaatgtttttatttttggtttgcttaacatgtgtc |
5224999 |
T |
 |
| Q |
104 |
cttagggtacaagttaacat |
123 |
Q |
| |
|
||||| | | |||||||||| |
|
|
| T |
5224998 |
cttagagcataagttaacat |
5224979 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45069931 - 45070028
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat |
98 |
Q |
| |
|
||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45069931 |
tttgttggaattaatgtattgcattttatttattaacttttaattagttgaatgcacaaatattaatggaatatttctattttagaattgcttaacat |
45070028 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 26638566 - 26638669
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||||||| | || || |||||||||| ||||| || ||||||||||| |
|
|
| T |
26638566 |
atttaattttttaatttttaattatttgaatgcacaagtattaaaaaaatatttctattattaggttctttaacatgtgtccttatggcacaagttaaca |
26638665 |
T |
 |
| Q |
123 |
taat |
126 |
Q |
| |
|
|||| |
|
|
| T |
26638666 |
taat |
26638669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 18436380 - 18436296
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||| | |||||||| |||| |||| ||||||||||| |||| |||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
18436380 |
ttttaatgaattgaatgctcaaagtttaaagaaatatttctttttttggatttcttaacatgtgccctaagggcacaagttaaca |
18436296 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 13771244 - 13771149
Alignment:
| Q |
3 |
tgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat |
98 |
Q |
| |
|
||||| |||||||||||| |||||||| | |||||||| ||| || |||||| ||| ||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
13771244 |
tgttggaattcgtgtattgagtttaatttttcaacttttagttaattaaatgcataaacattaagaaaatatttctatttttaggttgcttaacat |
13771149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30381329 - 30381231
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaat-tagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| | |||| | |||| | ||||| |||||| ||||||||| |||||| |||||| ||||||| |
|
|
| T |
30381329 |
tttgttgaaattcgtgtattgaatttaattttttaacctctaatcaatttgactacacaagtattaaggaaatatttttatttttagattgtttaacat |
30381231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 37188725 - 37188668
Alignment:
| Q |
3 |
tgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaa |
60 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
37188725 |
tgttgaaatttgtgtattaaatttaattttttaacttttagttaatggaatgcacaaa |
37188668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 31262450 - 31262541
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacataatcct |
129 |
Q |
| |
|
||||||| ||||||||| ||||| || || |||||||||| |||| || || ||||||||||||||| |||| ||| ||||| || ||||| |
|
|
| T |
31262450 |
ttttaatgagttgaatgtacaaaatttgataaaatatttctttttttaggtttcttaacatgtgccctgagggcacaggttaatattatcct |
31262541 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 40030715 - 40030666
Alignment:
| Q |
73 |
atttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
40030715 |
atttctacttttaaattgcttaacatgtgcccttggggtgcaagttaaca |
40030666 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 30058475 - 30058522
Alignment:
| Q |
75 |
ttctattttaagattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
30058475 |
ttctattttaag-ttctttaacttgtgcccttagggtacaagttaacat |
30058522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49945396 - 49945478
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt |
83 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49945396 |
tttgttggaattcgtatattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt |
49945478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 47495840 - 47495737
Alignment:
| Q |
5 |
ttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccc |
104 |
Q |
| |
|
|||||||||||||||| ||||| ||| | |||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
47495840 |
ttgaaattcgtgtattgaatttattttttcaacttttaattaattaaatgcacaaatattaaagaaatatttctattttttagttgcttaacatgtgccc |
47495741 |
T |
 |
| Q |
105 |
ttag |
108 |
Q |
| |
|
|||| |
|
|
| T |
47495740 |
ttag |
47495737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29631668 - 29631749
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt |
83 |
Q |
| |
|
||||||| | |||||| |||| ||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
29631668 |
tttgttgtatttcgtgcattaaatttaattt-ttaacttttaattgattgaatgcacaagtattaaggaaatatttttatttt |
29631749 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 12060305 - 12060220
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||| |||||||||| ||| ||||||| ||||||||| | |||||||||||| |
|
|
| T |
12060305 |
ttttgattaattgaatgcacaaaatttaatgaaatgtttctatttttgagttgtttaacatatgcccttagagcacaagttaacat |
12060220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 45054701 - 45054801
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttcta-ttttaagattgcttaacatgtgcccttagggtacaagttaac |
121 |
Q |
| |
|
||||||||| || |||||| |||| ||||||| ||||| | || | ||| |||||| |||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
45054701 |
atttaatttttttacttttgattaattgaatgtacaaaattcaagggaatgtttctacttttgag-ttgcttaacatgtgcccttagggcacaagttaac |
45054799 |
T |
 |
| Q |
122 |
at |
123 |
Q |
| |
|
|| |
|
|
| T |
45054800 |
at |
45054801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 32733685 - 32733754
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta |
107 |
Q |
| |
|
||||||| | ||||||||||||| |||| |||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
32733685 |
ttttaatgaattgaatgcacaaagtttaagaaaatatttctttttttggatttcttaacatgtgccctta |
32733754 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 37238907 - 37238939
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
37238907 |
cttaacatgtgcccttagggcacaagttaacat |
37238939 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 38773653 - 38773697
Alignment:
| Q |
89 |
tgcttaacatgtgcccttagggtacaagttaacataatcctattt |
133 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| | ||||||| |
|
|
| T |
38773653 |
tgcttaacatgtgccctaagggcacaagttaacatgaccctattt |
38773697 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 21970855 - 21970949
Alignment:
| Q |
25 |
ttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtta |
119 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||| ||||||||| |||||| |||||||||| ||||||| |||||| |||||||| |
|
|
| T |
21970855 |
ttaattttttaacttttaattaattgaatgcacaaatcttaaagaaatatttttattttttgattgcttaatatgtgcctttagggcacaagtta |
21970949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 22530912 - 22531012
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||||| |||||||||||||| || ||| || || |||| ||||||||||| ||||| |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
22530912 |
atttaattttttaacttttaattaatttaattcataagtattgatgaaatattttcatttttggattgcttaacatgtgttcttaggacaaaagttaaca |
22531011 |
T |
 |
| Q |
123 |
t |
123 |
Q |
| |
|
| |
|
|
| T |
22531012 |
t |
22531012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 533374 - 533436
Alignment:
| Q |
33 |
ttaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaa |
95 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| ||| ||||||||||| || |||||||| |
|
|
| T |
533374 |
ttaacttttaattaattgaatacacaaattttaaaaaaacatttctatttttaggttgcttaa |
533436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 13243821 - 13243903
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaa |
120 |
Q |
| |
|
||||||| | ||||||| ||||| |||| |||||||||| |||| |||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
13243821 |
ttttaatgaattgaatgtacaaagtttaagaaaatatttctttttttggatttcttaacatgtgccctaagggcacaagttaa |
13243903 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 3159660 - 3159579
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtta |
119 |
Q |
| |
|
||||||| | ||||||||||||| |||| ||||||||| |||| | ||| ||||||||||||||| |||| |||||||| |
|
|
| T |
3159660 |
ttttaatgaattgaatgcacaaagtttaagagaatatttctttttttaaatttcttaacatgtgccctaagggcacaagtta |
3159579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 33022537 - 33022577
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacataatcctat |
131 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
33022537 |
cttaacttgtgcccttagggcacaagttaacatgatcctat |
33022577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10655394 - 10655509
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt |
100 |
Q |
| |
|
||||||| |||||||| |||| |||| ||| |||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10655394 |
tttgttggaattcgtgcatta-attt--ttttttaacttttaattaattgaatgcacaagtattaaggaaatatttctatttttggattgcttaacatgt |
10655490 |
T |
 |
| Q |
101 |
gcccttagggtacaagtta |
119 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
10655491 |
actcttaggacacaagtta |
10655509 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 12289065 - 12289162
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatga-aatatttctattttaagattgcttaacatgtgcccttagggtacaagttaa |
120 |
Q |
| |
|
|||||||| ||||||||| |||| |||||| |||||| ||| | || |||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12289065 |
atttaattctttaacttttgattaattgaatacacaaa-attcaagagaatatttctacttttggattgcttaacatgtgcccttagggcacaagttaa |
12289162 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 12199272 - 12199367
Alignment:
| Q |
5 |
ttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgc |
102 |
Q |
| |
|
|||||||| ||| ||| ||||||||| |||||||||||||| |||||||||||||| |||| |||||||| || ||| | |||||||||||||||| |
|
|
| T |
12199272 |
ttgaaatttgtgaatttaatttaattt-ttaacttttaattaattgaatgcacaaattttaa-aaaatatttttaattttaaattgcttaacatgtgc |
12199367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 5683483 - 5683400
Alignment:
| Q |
24 |
tttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta |
107 |
Q |
| |
|
|||||| | |||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||| |||| |||||| |
|
|
| T |
5683483 |
tttaatattttaacttttaattaattaaatgcataaatattaagagaatatttctatctttagattgcttaatatgtaccctta |
5683400 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 141372 - 141472
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatga-aatatttctattttaagattgcttaacatgtgcccttagggtacaagttaac |
121 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||| ||| | || |||||||||| ||| |||||||||||||| | |||||| | |||||||||| |
|
|
| T |
141372 |
atttaattctttaacttttgattaattgaatgcacaaa-attcaagagaatatttctactttgggattgcttaacatgcgtccttagagcacaagttaac |
141470 |
T |
 |
| Q |
122 |
at |
123 |
Q |
| |
|
|| |
|
|
| T |
141471 |
at |
141472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 29429683 - 29429771
Alignment:
| Q |
35 |
aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||| || |||||||||| |||| || ||||||| ||| | |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
29429683 |
aacttttaattaattaaatgcacaaaatttaagaaacaatttctacttttgggttgcttaacatgtgccctaagggcacaagttaacat |
29429771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 26105139 - 26105182
Alignment:
| Q |
88 |
ttgcttaacatgtgcccttagggtacaagttaacataatcctat |
131 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
26105139 |
ttgcttaacatgtgcccttagggaacaaattaacataaccctat |
26105182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 14512934 - 14512874
Alignment:
| Q |
35 |
aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaa |
95 |
Q |
| |
|
||||||||||| ||||||||| || |||||| |||||||||||||| | |||||||||| |
|
|
| T |
14512934 |
aacttttaattgattgaatgcataagtattaaggaaatatttctattatttgattgcttaa |
14512874 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2733258 - 2733156
Alignment:
| Q |
1 |
tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt |
100 |
Q |
| |
|
||||||| |||||||| ||| ||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
2733258 |
tttgttggaattcgtgcattgcatttaattttttatattttatttagttaaatgcacaaatattaatgaaatatttctattttgggattgattaacctgt |
2733159 |
T |
 |
| Q |
101 |
gcc |
103 |
Q |
| |
|
||| |
|
|
| T |
2733158 |
gcc |
2733156 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 18734312 - 18734240
Alignment:
| Q |
51 |
aatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
18734312 |
aatgaacaaatattaatagaatatttctattttaagattgcttgacatgtgcccttacgacacaagttaacat |
18734240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 44151565 - 44151462
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatg-aaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaac |
121 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||| |||||| | |||||| |||||||| || ||||||||| ||| ||||||| |||||||||| |
|
|
| T |
44151565 |
atttaattt-ttaacttttaattgattgaatgtacaagtattaagggaaatatatctatttttagggtgcttaacaagtgtccttaggacacaagttaac |
44151467 |
T |
 |
| Q |
122 |
ataat |
126 |
Q |
| |
|
||||| |
|
|
| T |
44151466 |
ataat |
44151462 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 44068816 - 44068778
Alignment:
| Q |
85 |
agattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
44068816 |
agattccttaacatgtgcccttagggcacaagttaacat |
44068778 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 410031 - 410063
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
410031 |
cttaacatgtgcccttagggcacaagttaacat |
410063 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 4282846 - 4282930
Alignment:
| Q |
23 |
atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta |
107 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||| |||| ||||||| |||||| | |||| |||||||| |||||| |
|
|
| T |
4282846 |
atttaattttttaacttttaattaattgaatatacaaattttaaaagaatatttttatttttgggttgcataacatgttccctta |
4282930 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 25626606 - 25626638
Alignment:
| Q |
91 |
cttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
25626606 |
cttaacatgtgcccttagggcacaagttaacat |
25626638 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 34929262 - 34929178
Alignment:
| Q |
38 |
ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca |
122 |
Q |
| |
|
||||||| | ||||||||||||| |||| |||||||| || ||| |||| ||||||||||||||| |||| | ||||||||| |
|
|
| T |
34929262 |
ttttaatgaattgaatgcacaaagtttaaggaaatattcctttttctggatttcttaacatgtgccctaagggcataagttaaca |
34929178 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 240612 - 240565
Alignment:
| Q |
75 |
ttctattttaagattgcttaacatgtgcccttagggtacaagttaacat |
123 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
240612 |
ttctatttta-gattgcttaacatgtgccctaagggcacaagttaacat |
240565 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 508905 - 508824
Alignment:
| Q |
17 |
tattatatttaatttattaacttttaattagttgaatgcacaaatatta-atgaaatatttctattttaagattgcttaacat |
98 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| || ||||||||||| ||| ||||| |||||||||||| |||||| ||||||| |
|
|
| T |
508905 |
tattaaatttaattttttaacttttgcttaattcaatgcacaaatcttatatgaa-tatttctatttttagattgtttaacat |
508824 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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