View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4711_high_9 (Length: 250)

Name: NF4711_high_9
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4711_high_9
NF4711_high_9
[»] chr4 (6 HSPs)
chr4 (1-241)||(2644628-2644859)
chr4 (23-123)||(50685654-50685754)
chr4 (38-122)||(53133541-53133625)
chr4 (91-125)||(564105-564139)
chr4 (91-123)||(22019522-22019554)
chr4 (86-122)||(24940758-24940794)
[»] chr7 (5 HSPs)
chr7 (1-123)||(41350350-41350472)
chr7 (23-123)||(42121381-42121481)
chr7 (92-130)||(39983214-39983252)
chr7 (23-123)||(37708444-37708544)
chr7 (91-123)||(25119872-25119904)
[»] chr8 (9 HSPs)
chr8 (1-107)||(2147885-2147994)
chr8 (1-83)||(38824650-38824733)
chr8 (9-75)||(16612229-16612295)
chr8 (66-118)||(5959945-5959997)
chr8 (1-83)||(11323141-11323223)
chr8 (9-109)||(24993638-24993739)
chr8 (74-125)||(25186260-25186311)
chr8 (89-123)||(26014843-26014877)
chr8 (91-123)||(8114300-8114332)
[»] chr1 (11 HSPs)
chr1 (1-108)||(2987490-2987597)
chr1 (4-123)||(5224979-5225098)
chr1 (1-98)||(45069931-45070028)
chr1 (23-126)||(26638566-26638669)
chr1 (38-122)||(18436296-18436380)
chr1 (3-98)||(13771149-13771244)
chr1 (1-98)||(30381231-30381329)
chr1 (3-60)||(37188668-37188725)
chr1 (38-129)||(31262450-31262541)
chr1 (73-122)||(40030666-40030715)
chr1 (75-123)||(30058475-30058522)
[»] chr3 (8 HSPs)
chr3 (1-83)||(49945396-49945478)
chr3 (5-108)||(47495737-47495840)
chr3 (1-83)||(29631668-29631749)
chr3 (38-123)||(12060220-12060305)
chr3 (23-123)||(45054701-45054801)
chr3 (38-107)||(32733685-32733754)
chr3 (91-123)||(37238907-37238939)
chr3 (89-133)||(38773653-38773697)
[»] chr6 (6 HSPs)
chr6 (25-119)||(21970855-21970949)
chr6 (23-123)||(22530912-22531012)
chr6 (33-95)||(533374-533436)
chr6 (38-120)||(13243821-13243903)
chr6 (38-119)||(3159579-3159660)
chr6 (91-131)||(33022537-33022577)
[»] chr5 (8 HSPs)
chr5 (1-119)||(10655394-10655509)
chr5 (23-120)||(12289065-12289162)
chr5 (5-102)||(12199272-12199367)
chr5 (24-107)||(5683400-5683483)
chr5 (23-123)||(141372-141472)
chr5 (35-123)||(29429683-29429771)
chr5 (88-131)||(26105139-26105182)
chr5 (35-95)||(14512874-14512934)
[»] chr2 (8 HSPs)
chr2 (1-103)||(2733156-2733258)
chr2 (51-123)||(18734240-18734312)
chr2 (23-126)||(44151462-44151565)
chr2 (85-123)||(44068778-44068816)
chr2 (91-123)||(410031-410063)
chr2 (23-107)||(4282846-4282930)
chr2 (91-123)||(25626606-25626638)
chr2 (38-122)||(34929178-34929262)
[»] scaffold0008 (1 HSPs)
scaffold0008 (75-123)||(240565-240612)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-98)||(508824-508905)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2644628 - 2644859
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt 100  Q
    ||||||||||||||||||||   |||||||| |||||||||||||| || |||||| ||||||||||| |||||||||||||||  ||||||||||||||    
2644628 tttgttgaaattcgtgtattgcgtttaatttgttaacttttaattacttaaatgcataaatattaatggaatatttctattttagaattgcttaacatgt 2644727  T
101 gcccttagggtacaagttaacataatcctatttaaatagttatgaaagtgtagccatattcaaataactcctaaaagaagtcaaaaaagaggaattcaat 200  Q
     || |||| |||||||||||||||| ||||||||| ||      |||   ||  || | | |  |||||||||||||||||||| |||||||||||||||    
2644728 acctttagagtacaagttaacataaccctatttaagta-----caaa---tattcaaagt-atgtaactcctaaaagaagtcaagaaagaggaattcaat 2644818  T
201 aaagatatgattttatgtctacaaccccatcattgcctttg 241  Q
    ||||||||||||||||| |||||||||||||||||||||||    
2644819 aaagatatgattttatgcctacaaccccatcattgcctttg 2644859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 50685654 - 50685754
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||||| || ||||||||||| |||||||||||||  | ||  |||||||||||||||   ||||||||| |||||||||||| | ||| |||||||    
50685654 atttaatttttttacttttaattaattgaatgcacaaaattcaagaaaatatttctatttttgaattgcttaaaatgtgcccttagagcacaggttaaca 50685753  T
123 t 123  Q
    |    
50685754 t 50685754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 53133541 - 53133625
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||| |||||||||| ||||  || || ||||||||||  ||| || || ||||||||||||||| |||| |||||||||||    
53133541 ttttaatgagttgaatgcgcaaaattttataaaatatttcttcttttaggtttcttaacatgtgccctaagggcacaagttaaca 53133625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 564139 - 564105
Alignment:
91 cttaacatgtgcccttagggtacaagttaacataa 125  Q
    ||||||||||||||| |||||||||||||||||||    
564139 cttaacatgtgccctaagggtacaagttaacataa 564105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 22019522 - 22019554
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
22019522 cttaacatgtgcccttagggcacaagttaacat 22019554  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 24940758 - 24940794
Alignment:
86 gattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||||||||||||| ||||||| |||||||||||    
24940758 gattgcttaacatgtgctcttagggaacaagttaaca 24940794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 41350350 - 41350472
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt 100  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    ||||||||||| |    
41350350 tttgttaaaattcgtgtattgcatttaatttattaacttttaattagttgaatgcataaatattaatgaaatatttttatttttgatttgcttaacatat 41350449  T
101 gcccttagggtacaagttaacat 123  Q
    |||||||| | ||||||||||||    
41350450 gcccttagagcacaagttaacat 41350472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 42121381 - 42121481
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||||| || |||||| |||| ||||||| |||||  ||||   ||| |||||| |||  | ||||||||||||||||||||||| | |||||||||    
42121381 atttaattttttcacttttcattaattgaatgtacaaaatttaagagaatgtttctacttttgggttgcttaacatgtgcccttagggcataagttaaca 42121480  T
123 t 123  Q
    |    
42121481 t 42121481  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 39983214 - 39983252
Alignment:
92 ttaacatgtgcccttagggtacaagttaacataatccta 130  Q
    ||||||||||||||||||| |||||||||||| ||||||    
39983214 ttaacatgtgcccttagggcacaagttaacattatccta 39983252  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 37708544 - 37708444
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattt-taagattgcttaacatgtgcccttagggtacaagttaac 121  Q
    ||||||||| || |||||| |||| |||||||||||||  |||| | ||| ||||||||| | || || |||||||| |||||||| || ||||||||||    
37708544 atttaatttttttacttttgattaattgaatgcacaaaatttaagggaatgtttctatttctgag-ttacttaacatctgcccttacggcacaagttaac 37708446  T
122 at 123  Q
    ||    
37708445 at 37708444  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 25119872 - 25119904
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
25119872 cttaacatgtgcccttagggcacaagttaacat 25119904  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2147994 - 2147885
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaactttta---attagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaaca 97  Q
    ||||||| ||||||| ||||  ||||||||| ||||||||||   ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
2147994 tttgttggaattcgtatattgcatttaatttgttaacttttagtaattagttgaatgcacaaatattaatgagatatttctattttgagattgcttaaca 2147895  T
98 tgtgccctta 107  Q
    ||||||||||    
2147894 tgtgccctta 2147885  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38824733 - 38824650
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaactttt-aattagttgaatgcacaaatattaatgaaatatttctatttt 83  Q
    ||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||    
38824733 tttgttggaattcatgtattgtatttaatttgttaactttttaattagttgaatgcacaattattaatgaaatatttctatttt 38824650  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 16612295 - 16612229
Alignment:
9 aattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatt 75  Q
    |||| |||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||    
16612295 aatttgtgtattacatttaatttgttaacttttaattcgttaaatgcacaaatattaatggaatatt 16612229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 5959997 - 5959945
Alignment:
66 atgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtt 118  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||| |||||||    
5959997 atgaaatatttctacttttagattccttaacatgtgcccttagggcacaagtt 5959945  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11323223 - 11323141
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt 83  Q
    ||||||||||||| || |||  ||||||||| | |||||| ||||| |||||||||||||||||||  |||||| | ||||||    
11323223 tttgttgaaattcatgcattggatttaatttttcaactttgaattaattgaatgcacaaatattaaaaaaatatctttatttt 11323141  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 24993638 - 24993739
Alignment:
9 aattcgtgtattatatttaatttatt-aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta 107  Q
    |||| ||| |||| ||||||||| || |||||||||||| ||||| ||| |||| |||| |||||| |||||||||    ||| ||||||||||||||||    
24993638 aatttgtgcattaaatttaatttttttaacttttaattaattgaaagcataaattttaaggaaataattctatttttgagttgtttaacatgtgccctta 24993737  T
108 gg 109  Q
    ||    
24993738 gg 24993739  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 25186260 - 25186311
Alignment:
74 tttctattttaagattgcttaacatgtgcccttagggtacaagttaacataa 125  Q
    |||||| ||| || ||||||||||||||||||||||| |||||||| |||||    
25186260 tttctacttttagtttgcttaacatgtgcccttagggcacaagttatcataa 25186311  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 26014877 - 26014843
Alignment:
89 tgcttaacatgtgcccttagggtacaagttaacat 123  Q
    ||||||||||||||||| |||||||||||||||||    
26014877 tgcttaacatgtgccctaagggtacaagttaacat 26014843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 8114332 - 8114300
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
8114332 cttaacatgtgcccttagggcacaagttaacat 8114300  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2987597 - 2987490
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt 100  Q
    ||||||| |||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
2987597 tttgttggaattcgcgtattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatgaaatatttctatttttgatttgcttaacatgt 2987498  T
101 gcccttag 108  Q
    | ||||||    
2987497 gtccttag 2987490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 5225098 - 5224979
Alignment:
4 gttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcc 103  Q
    |||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||  | |||||||||||||| |    
5225098 gttggaattcgtgtattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatggaatgtttttatttttggtttgcttaacatgtgtc 5224999  T
104 cttagggtacaagttaacat 123  Q
    ||||| | | ||||||||||    
5224998 cttagagcataagttaacat 5224979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45069931 - 45070028
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat 98  Q
    ||||||| ||||  ||||||  |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
45069931 tttgttggaattaatgtattgcattttatttattaacttttaattagttgaatgcacaaatattaatggaatatttctattttagaattgcttaacat 45070028  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 26638566 - 26638669
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||||| |||| ||||||||| |||||||||||| ||||||  ||||||||||||| | || ||  |||||||||| ||||| || |||||||||||    
26638566 atttaattttttaatttttaattatttgaatgcacaagtattaaaaaaatatttctattattaggttctttaacatgtgtccttatggcacaagttaaca 26638665  T
123 taat 126  Q
    ||||    
26638666 taat 26638669  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 18436380 - 18436296
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||| | |||||||| ||||  |||| ||||||||||| ||||  |||| ||||||||||||||| |||| |||||||||||    
18436380 ttttaatgaattgaatgctcaaagtttaaagaaatatttctttttttggatttcttaacatgtgccctaagggcacaagttaaca 18436296  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 13771244 - 13771149
Alignment:
3 tgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat 98  Q
    ||||| ||||||||||||   |||||||| | |||||||| ||| || |||||| ||| |||||  ||||||||||||||| || |||||||||||    
13771244 tgttggaattcgtgtattgagtttaatttttcaacttttagttaattaaatgcataaacattaagaaaatatttctatttttaggttgcttaacat 13771149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30381329 - 30381231
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaat-tagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacat 98  Q
    ||||||||||||||||||||  ||||||||| ||||| | ||||  | |||| | ||||| |||||| ||||||||| |||||| |||||| |||||||    
30381329 tttgttgaaattcgtgtattgaatttaattttttaacctctaatcaatttgactacacaagtattaaggaaatatttttatttttagattgtttaacat 30381231  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 37188725 - 37188668
Alignment:
3 tgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaa 60  Q
    |||||||||| |||||||| ||||||||| |||||||||| ||| | |||||||||||    
37188725 tgttgaaatttgtgtattaaatttaattttttaacttttagttaatggaatgcacaaa 37188668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 31262450 - 31262541
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacataatcct 129  Q
    ||||||| ||||||||| |||||  || || |||||||||| |||| || || ||||||||||||||| |||| ||| ||||| || |||||    
31262450 ttttaatgagttgaatgtacaaaatttgataaaatatttctttttttaggtttcttaacatgtgccctgagggcacaggttaatattatcct 31262541  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 40030715 - 40030666
Alignment:
73 atttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||| ||| | |||||||||||||||||||| |||| ||||||||||    
40030715 atttctacttttaaattgcttaacatgtgcccttggggtgcaagttaaca 40030666  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 30058475 - 30058522
Alignment:
75 ttctattttaagattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||||||||    
30058475 ttctattttaag-ttctttaacttgtgcccttagggtacaagttaacat 30058522  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49945396 - 49945478
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt 83  Q
    ||||||| ||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
49945396 tttgttggaattcgtatattgcatttaatttgttaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt 49945478  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 47495840 - 47495737
Alignment:
5 ttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccc 104  Q
    ||||||||||||||||  ||||| ||| | |||||||||||| || |||||||||||||||| ||||||||||||||||    |||||||||||||||||    
47495840 ttgaaattcgtgtattgaatttattttttcaacttttaattaattaaatgcacaaatattaaagaaatatttctattttttagttgcttaacatgtgccc 47495741  T
105 ttag 108  Q
    ||||    
47495740 ttag 47495737  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29631668 - 29631749
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctatttt 83  Q
    ||||||| | |||||| |||| ||||||||| |||||||||||||  |||||||||||| |||||| ||||||||| ||||||    
29631668 tttgttgtatttcgtgcattaaatttaattt-ttaacttttaattgattgaatgcacaagtattaaggaaatatttttatttt 29631749  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 12060305 - 12060220
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    |||| |||| |||||||||||||  |||||||||| ||||||||||    ||| ||||||| ||||||||| | ||||||||||||    
12060305 ttttgattaattgaatgcacaaaatttaatgaaatgtttctatttttgagttgtttaacatatgcccttagagcacaagttaacat 12060220  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 45054701 - 45054801
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttcta-ttttaagattgcttaacatgtgcccttagggtacaagttaac 121  Q
    ||||||||| || |||||| |||| ||||||| |||||  | || | ||| |||||| |||| || ||||||||||||||||||||||| ||||||||||    
45054701 atttaatttttttacttttgattaattgaatgtacaaaattcaagggaatgtttctacttttgag-ttgcttaacatgtgcccttagggcacaagttaac 45054799  T
122 at 123  Q
    ||    
45054800 at 45054801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 32733685 - 32733754
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta 107  Q
    ||||||| | |||||||||||||  ||||  |||||||||| ||||  |||| |||||||||||||||||    
32733685 ttttaatgaattgaatgcacaaagtttaagaaaatatttctttttttggatttcttaacatgtgccctta 32733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 37238907 - 37238939
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
37238907 cttaacatgtgcccttagggcacaagttaacat 37238939  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 38773653 - 38773697
Alignment:
89 tgcttaacatgtgcccttagggtacaagttaacataatcctattt 133  Q
    ||||||||||||||||| |||| |||||||||||| | |||||||    
38773653 tgcttaacatgtgccctaagggcacaagttaacatgaccctattt 38773697  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 21970855 - 21970949
Alignment:
25 ttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtta 119  Q
    ||||||| |||||||||||||| |||||||||||||| |||| ||||||||| ||||||  |||||||||| ||||||| |||||| ||||||||    
21970855 ttaattttttaacttttaattaattgaatgcacaaatcttaaagaaatatttttattttttgattgcttaatatgtgcctttagggcacaagtta 21970949  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 22530912 - 22531012
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||||| |||||||||||||| || ||| || || |||| |||||||||||  |||||  ||||||||||||||||  ||||||  | |||||||||    
22530912 atttaattttttaacttttaattaatttaattcataagtattgatgaaatattttcatttttggattgcttaacatgtgttcttaggacaaaagttaaca 22531011  T
123 t 123  Q
    |    
22531012 t 22531012  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 533374 - 533436
Alignment:
33 ttaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaa 95  Q
    |||||||||||||| |||||| ||||||| ||||  ||| ||||||||||| || ||||||||    
533374 ttaacttttaattaattgaatacacaaattttaaaaaaacatttctatttttaggttgcttaa 533436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 13243821 - 13243903
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaa 120  Q
    ||||||| | ||||||| |||||  ||||  |||||||||| ||||  |||| ||||||||||||||| |||| |||||||||    
13243821 ttttaatgaattgaatgtacaaagtttaagaaaatatttctttttttggatttcttaacatgtgccctaagggcacaagttaa 13243903  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 3159660 - 3159579
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagtta 119  Q
    ||||||| | |||||||||||||  ||||   ||||||||| |||| | ||| ||||||||||||||| |||| ||||||||    
3159660 ttttaatgaattgaatgcacaaagtttaagagaatatttctttttttaaatttcttaacatgtgccctaagggcacaagtta 3159579  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 33022537 - 33022577
Alignment:
91 cttaacatgtgcccttagggtacaagttaacataatcctat 131  Q
    |||||| ||||||||||||| |||||||||||| |||||||    
33022537 cttaacttgtgcccttagggcacaagttaacatgatcctat 33022577  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10655394 - 10655509
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt 100  Q
    ||||||| |||||||| |||| ||||  ||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||  |||||||||||||||    
10655394 tttgttggaattcgtgcatta-attt--ttttttaacttttaattaattgaatgcacaagtattaaggaaatatttctatttttggattgcttaacatgt 10655490  T
101 gcccttagggtacaagtta 119  Q
     | ||||||  ||||||||    
10655491 actcttaggacacaagtta 10655509  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 12289065 - 12289162
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatga-aatatttctattttaagattgcttaacatgtgcccttagggtacaagttaa 120  Q
    ||||||||  ||||||||| |||| |||||| |||||| ||| | || |||||||||| |||  ||||||||||||||||||||||||| |||||||||    
12289065 atttaattctttaacttttgattaattgaatacacaaa-attcaagagaatatttctacttttggattgcttaacatgtgcccttagggcacaagttaa 12289162  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 12199272 - 12199367
Alignment:
5 ttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgc 102  Q
    |||||||| ||| |||  ||||||||| |||||||||||||| |||||||||||||| ||||  |||||||| || ||| | ||||||||||||||||    
12199272 ttgaaatttgtgaatttaatttaattt-ttaacttttaattaattgaatgcacaaattttaa-aaaatatttttaattttaaattgcttaacatgtgc 12199367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 5683483 - 5683400
Alignment:
24 tttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta 107  Q
    |||||| | |||||||||||||| || |||||| |||||||||   ||||||||||| || ||||||||||| |||| ||||||    
5683483 tttaatattttaacttttaattaattaaatgcataaatattaagagaatatttctatctttagattgcttaatatgtaccctta 5683400  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 141372 - 141472
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatga-aatatttctattttaagattgcttaacatgtgcccttagggtacaagttaac 121  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| | || |||||||||| |||  |||||||||||||| | |||||| | ||||||||||    
141372 atttaattctttaacttttgattaattgaatgcacaaa-attcaagagaatatttctactttgggattgcttaacatgcgtccttagagcacaagttaac 141470  T
122 at 123  Q
    ||    
141471 at 141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 29429683 - 29429771
Alignment:
35 aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||| || ||||||||||  ||||  ||  ||||||| |||  | |||||||||||||||||| |||| ||||||||||||    
29429683 aacttttaattaattaaatgcacaaaatttaagaaacaatttctacttttgggttgcttaacatgtgccctaagggcacaagttaacat 29429771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 26105139 - 26105182
Alignment:
88 ttgcttaacatgtgcccttagggtacaagttaacataatcctat 131  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||    
26105139 ttgcttaacatgtgcccttagggaacaaattaacataaccctat 26105182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 14512934 - 14512874
Alignment:
35 aacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaa 95  Q
    |||||||||||  ||||||||| || |||||| |||||||||||||| |  ||||||||||    
14512934 aacttttaattgattgaatgcataagtattaaggaaatatttctattatttgattgcttaa 14512874  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2733258 - 2733156
Alignment:
1 tttgttgaaattcgtgtattatatttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgt 100  Q
    ||||||| |||||||| |||  ||||||||| |||  ||||| |||||| |||||||||||||||||||||||||||||||||  ||||| ||||| |||    
2733258 tttgttggaattcgtgcattgcatttaattttttatattttatttagttaaatgcacaaatattaatgaaatatttctattttgggattgattaacctgt 2733159  T
101 gcc 103  Q
    |||    
2733158 gcc 2733156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 18734312 - 18734240
Alignment:
51 aatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    |||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||| |  ||||||||||||    
18734312 aatgaacaaatattaatagaatatttctattttaagattgcttgacatgtgcccttacgacacaagttaacat 18734240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 44151565 - 44151462
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatg-aaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaac 121  Q
    ||||||||| |||||||||||||  ||||||| |||| |||||| | |||||| |||||||| ||  ||||||||| ||| |||||||  ||||||||||    
44151565 atttaattt-ttaacttttaattgattgaatgtacaagtattaagggaaatatatctatttttagggtgcttaacaagtgtccttaggacacaagttaac 44151467  T
122 ataat 126  Q
    |||||    
44151466 ataat 44151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 44068816 - 44068778
Alignment:
85 agattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    ||||| |||||||||||||||||||| ||||||||||||    
44068816 agattccttaacatgtgcccttagggcacaagttaacat 44068778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 410031 - 410063
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
410031 cttaacatgtgcccttagggcacaagttaacat 410063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 4282846 - 4282930
Alignment:
23 atttaatttattaacttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgccctta 107  Q
    ||||||||| |||||||||||||| ||||||  |||||| ||||   ||||||| ||||||  | |||| |||||||| ||||||    
4282846 atttaattttttaacttttaattaattgaatatacaaattttaaaagaatatttttatttttgggttgcataacatgttccctta 4282930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 25626606 - 25626638
Alignment:
91 cttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||||||||||||| ||||||||||||    
25626606 cttaacatgtgcccttagggcacaagttaacat 25626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 34929262 - 34929178
Alignment:
38 ttttaattagttgaatgcacaaatattaatgaaatatttctattttaagattgcttaacatgtgcccttagggtacaagttaaca 122  Q
    ||||||| | |||||||||||||  |||| |||||||| || |||   |||| ||||||||||||||| |||| | |||||||||    
34929262 ttttaatgaattgaatgcacaaagtttaaggaaatattcctttttctggatttcttaacatgtgccctaagggcataagttaaca 34929178  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 240612 - 240565
Alignment:
75 ttctattttaagattgcttaacatgtgcccttagggtacaagttaacat 123  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||||    
240612 ttctatttta-gattgcttaacatgtgccctaagggcacaagttaacat 240565  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 508905 - 508824
Alignment:
17 tattatatttaatttattaacttttaattagttgaatgcacaaatatta-atgaaatatttctattttaagattgcttaacat 98  Q
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508905 tattaaatttaattttttaacttttgcttaattcaatgcacaaatcttatatgaa-tatttctatttttagattgtttaacat 508824  T

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