View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4711_low_2 (Length: 604)
Name: NF4711_low_2
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 5606781 - 5607380
Alignment:
| Q |
1 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaatatattttttgaattatacatcttttgtaatgagtgctttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5606781 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaatatattttttgaattatacatcttttgtaatgcgtgctttg |
5606880 |
T |
|
| Q |
101 |
atattctcgcatgaattataaccattttcaaaccatataatttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5606881 |
atattctcgcatgaattataaccattttcaaaccatataatttgatccattttgatgcagtctctgcaattcatatgaggatgcttcattgctgttagac |
5606980 |
T |
|
| Q |
201 |
acgctccgcttgtttgataatcaagtgtatggtgtcaccaatggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606981 |
acgctccgcttgtttgataatcaagtgtatggtgtcaccaatggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatg |
5607080 |
T |
|
| Q |
301 |
aactcatgcatatggatccttcaacttcgtctgccttttataacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaa |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607081 |
aactcatgtgtatggatccttcaacttcgtctgccttttataacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaa |
5607180 |
T |
|
| Q |
401 |
tgtgtcagttttgcttctgttaattttctaatttgtttatctaacattctgattttcnnnnnnnnnnnataataaaatttgttatcgacaccagagacgc |
500 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||| |
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| T |
5607181 |
tgtatcagttttgcttctgttaattttctaatttgtttatctaacattctgattttc--tgtttttttataataaaatttgttattgacatcagaaacgc |
5607278 |
T |
|
| Q |
501 |
ggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtcttgtggtgctg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607279 |
ggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtcttgtggtgctg |
5607378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 492 - 602
Target Start/End: Complemental strand, 5588694 - 5588584
Alignment:
| Q |
492 |
cagagacgcggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtctt |
591 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5588694 |
cagagacgcggagctgaaatggttgtaaccgaagggagacgccgaaatgtgtggaaaggtgaatggtcaatttcttgtctggatctgcatctgatgtctt |
5588595 |
T |
|
| Q |
592 |
gtggtgctgct |
602 |
Q |
| |
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||||||||||| |
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| T |
5588594 |
gtggtgctgct |
5588584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 492 - 602
Target Start/End: Complemental strand, 5593655 - 5593545
Alignment:
| Q |
492 |
cagagacgcggagctgaaatggttgtaattgaagggagacgccgaaatgtgtggaaaggcgaatggtcaatttcttgcttggatctgcatctgatgtctt |
591 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5593655 |
cagagacgcggagctgaaatggttgtaaccgaagggagacgccgaaatgtgtggaaaggtgaatggtcaatttcttgtctggatctgcatctgatgtctt |
5593556 |
T |
|
| Q |
592 |
gtggtgctgct |
602 |
Q |
| |
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||||||||||| |
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|
| T |
5593555 |
gtggtgctgct |
5593545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 142 - 422
Target Start/End: Complemental strand, 5589031 - 5588753
Alignment:
| Q |
142 |
ttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagacacgctccgcttgtttgataatcaagtgtatggtgtcaccaa |
241 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||| |||||| ||||||||| | || ||| |||||||||| || || |||||||| || | |
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| T |
5589031 |
ttgatccattttgatgcagtcgttgcaattcatttgaggacgcttcaatgctgttaggtgcacttcgcctgtttgataaccaggtctatggtgtaacgca |
5588932 |
T |
|
| Q |
242 |
tggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaactcatgcatatggatccttcaacttcgtctgccttttat |
341 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||| | ||| | |||||||| |||||| | | || ||||||| |||||||| | || ||||| ||| |
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| T |
5588931 |
tggattgttgatgggttatagagaacaagtatggtttcaggctcaaactctgtttgatgaaatgaggcgtatggattcttcaactgcatccgccttctat |
5588832 |
T |
|
| Q |
342 |
aacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatgtgtcagttttgcttctgtta |
422 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||| || |||||||| ||||||| |
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| T |
5588831 |
aacgccctcacagatatgctgtggcagtttggtcaggt--aaagtccagccattagaaatttgctagttttgcatctgtta |
5588753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 142 - 422
Target Start/End: Complemental strand, 5593992 - 5593714
Alignment:
| Q |
142 |
ttgatccatttcgatgcagtctctgcaattcttatgaggatgcttcattgctgttagacacgctccgcttgtttgataatcaagtgtatggtgtcaccaa |
241 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||| |||||| ||||||||| | || ||| |||||||||| || || |||||||| || | |
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| T |
5593992 |
ttgatccattttgatgcagtcgttgcaattcatttgaggacgcttcaatgctgttaggtgcacttcgcctgtttgataaccaggtctatggtgtaacgca |
5593893 |
T |
|
| Q |
242 |
tggactgttaatgggttacagagaacaagtatggctaagtgctgagactctgttcgatgaactcatgcatatggatccttcaacttcgtctgccttttat |
341 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||| | ||| | |||||||| |||||| | | || ||||||| |||||||| | || ||||| ||| |
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| T |
5593892 |
tggattgttgatgggttatagagaacaagtatggtttcaggctcaaactctgtttgatgaaatgaggcgtatggattcttcaactgcatccgccttctat |
5593793 |
T |
|
| Q |
342 |
aacgccctcactgatatgctgtggcactttggtcaggtaaaaagtccagccatcagaaatgtgtcagttttgcttctgtta |
422 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||| || |||||||| ||||||| |
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| T |
5593792 |
aacgccctcacagatatgctgtggcagtttggtcaggt--aaagtccagccattagaaatttgctagttttgcatctgtta |
5593714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5589170 - 5589110
Alignment:
| Q |
1 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaata |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5589170 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaata |
5589110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5594131 - 5594071
Alignment:
| Q |
1 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaata |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5594131 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaata |
5594071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6624171 - 6624231
Alignment:
| Q |
1 |
gctgaacattaaaccaaatgttgtcacattttcagccattttgaatgcttgcaggtaaata |
61 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
6624171 |
gctgcacattaaaccaaatgttgcaacattttcatccattttgaatgcttgcaggtaaata |
6624231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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