View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4711_low_7 (Length: 279)
Name: NF4711_low_7
Description: NF4711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4711_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 43618748 - 43618978
Alignment:
| Q |
11 |
aatgatgattgcaagaaactaatgcttgtaaattagtaactagcttatctatgtaacaactattggataagtagccaattttaattttgaggatgctttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618748 |
aatgatgattgcaagaaactaatgcttctaaattagtaactagcttatctatgtaacaactattggataagtagccaattttaattttgaggatgctttc |
43618847 |
T |
|
| Q |
111 |
ttttttatcctcaaataatgtgaaaagagaaaatttcaccttatattaaagtagcaataaaaacttaagtaccttttaaatcacttaacttatttttgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618848 |
ttttttatcctcaaataatgtgaaaagagtaaatttcaccttatattaaagtagcaataaaaacttaagtaccttttaaatcacttaacttatttttgaa |
43618947 |
T |
|
| Q |
211 |
gtctatgttggtctctaaacttttaaaagta |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
43618948 |
gtttatgttggtctctaaacttttaaaagta |
43618978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 43611830 - 43611903
Alignment:
| Q |
72 |
attggataagtagccaattttaattttgaggatgctttcttttttatcctcaaataatgtgaaaagagaaaatt |
145 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43611830 |
attggataagtagccaatttcaaatttgaggatcctttctttttcatcctcaaataatgtgaaaagagaaaatt |
43611903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 43611738 - 43611779
Alignment:
| Q |
11 |
aatgatgattgcaagaaactaatgcttgtaaattagtaacta |
52 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
43611738 |
aatgatgagtgcaagaaactaatgcttctaaattagtaacta |
43611779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University