View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-1 (Length: 1052)
Name: NF4712-Insertion-1
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 7 - 853
Target Start/End: Original strand, 15176727 - 15177586
Alignment:
| Q |
7 |
atcttggtacttcaccaaattccccatgatccattccaatgctgttgaagttgtatctgttcccgcatttagaaactcggaacataaagtacaaatttga |
106 |
Q |
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| T |
15176727 |
atcttggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaactcggaacataaagtacaaatttta |
15176826 |
T |
|
| Q |
107 |
ccatcatcaagttggatccttttattatcttcctcaaataactccaaatccaacaatgtatctgcatatgacaaaacaaattcatcgtgtgactcattga |
206 |
Q |
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| T |
15176827 |
ccatcatcaagttggctccttttattatcttcttccaataactccaaatccaacaatgtatctacatatgacaaaacaaattcaccatgtgattcattga |
15176926 |
T |
|
| Q |
207 |
cattgttctctccatcggtccttaa-------------attttccttcgagcgtttatacaaggaatcaacatggcattctgatcacttctcagcttcaa |
293 |
Q |
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| T |
15176927 |
gattgttctctctatcagtccttaatctctcttctttgattttccttcgagcgtttatataaggattcaacacagcttcctgatcacttctcagcttcaa |
15177026 |
T |
|
| Q |
294 |
aaattcattccatcgattcctatacagtatctttgtaataggtggccaaagatccaaaacattatatctagaaaagttaagaagcatgatgcgttaactt |
393 |
Q |
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| T |
15177027 |
aaattccttccatcgattcctatacagtatctttgtaataggtggccaaaaattcaaaacattgtatctagaaaagttaagaagcatgatgcgttgactt |
15177126 |
T |
|
| Q |
394 |
tcttcaatttctcttatttgattctcatctagtttgtccccaaaacacatgagagccaacaaagagaacattccatatcgaaaatgatcgatgacaaaaa |
493 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |
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| T |
15177127 |
tcttcaatttctcttatttgattcacgtctagtttgtccccaaaacacatgagagccaacaaagaaaacattccgtatcgaaaatgatcaacgacaaaaa |
15177226 |
T |
|
| Q |
494 |
tccccttggtgtttctttcatgtgaaatatttttgagacgatgtagaagaatgtctaagacccatttgcgcacttaagcataggacctaacatgtgaagg |
593 |
Q |
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| T |
15177227 |
tcccctcggtgtttctttcatgtgaaacatttttcagacgttgtagaagaatgtctaacacccatttgcgcgcttgagcataggacttaacctgtgaagg |
15177326 |
T |
|
| Q |
594 |
ttgaaggattcttgaagtgaggttgcgtcttaagaggcgccaaatgggaccgtagaagctaaagaggatgttgtgttgattgcggctaattatattcttt |
693 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
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| T |
15177327 |
gtgaaggattcttgaagtgaggttgcgtcttaagaggcgccaaatgggaccgtagaagctaaagaggatgtcatgttgattgctgctaattatcttcttt |
15177426 |
T |
|
| Q |
694 |
gttggaacggccttagggcaatcagcgaagatggtgctattttggattaatgcttgatgtgcaagaaatctgttggcaattaaaatgtccgtgtaagaac |
793 |
Q |
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|| ||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||| |
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| T |
15177427 |
gtgggaaccgcctcagggcgatcagcgaatatggtgctattttggattaatgcttgatgtgcaagaaatctattggcaatgtaaatgtcggtgttagaac |
15177526 |
T |
|
| Q |
794 |
ccatttgaagagtgaagataggaccatatttggcatgaagatcttgaagaagggttttag |
853 |
Q |
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| T |
15177527 |
ccatttgaagagtgaagattgaaccatatttggcatgaagatcttgaagaagggttttag |
15177586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 26506582 - 26506512
Alignment:
| Q |
20 |
accaaattccccatgatccattccaatgctgttgaagttgtatctgttcccgcatttagaaactcggaaca |
90 |
Q |
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||||||||| |||| | ||| || ||||| |||||||||||||||||||| ||| | |||||||| ||||| |
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| T |
26506582 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgagaaactccgaaca |
26506512 |
T |
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