View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-2 (Length: 487)
Name: NF4712-Insertion-2
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 29959248 - 29958768
Alignment:
| Q |
8 |
aaatgttatgtttatcatgatgaaaccaaacatcaaggcaaaacattacacaaatttggatgagtcacacgtggtctctgtttcacacgataataataca |
107 |
Q |
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| T |
29959248 |
aaatgttatgtttatcatgatgaaaccaaacatcaaggcaaaacattacacaaatttggatgagtcacacgtggtctctgtttcacacgataataataca |
29959149 |
T |
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| Q |
108 |
tgttgacaggcttgtgattggtcgctatttcccaaatgtccgnnnnnnnnaacgtgggagttctcacaaccacaccataatgtctccaaatttaattcac |
207 |
Q |
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| T |
29959148 |
tgttgacaggcctgtgattggtcgctatttcccaaatgtccgttttttttaacgtgggagttctcacaaccacaccataatgtctccaaatttaattcac |
29959049 |
T |
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| Q |
208 |
ttgtcatttttcaaaactatttaatttcgatagtgatatttatctttctcatttacttgacacgccaaatattttctagcctcacaattttgaatacctt |
307 |
Q |
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| T |
29959048 |
ttgtcatttttcaaaactatttaatttcgatagtgatatttatctttctcatttacttgacacgccaaatattttctagcctcacaattttgaatacctt |
29958949 |
T |
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| Q |
308 |
acctctt-cattcttttaaccattttctcaattcactattgtcaactttttaacaccctcttggtggtctcaatactttttgtatttaagtttttactgg |
406 |
Q |
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| T |
29958948 |
acctcttcctttcttttaaccattttctcaattcactattgtcaactttttaacaccctcttggtggtctcaatactttttgtattcaagtttttattgg |
29958849 |
T |
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| Q |
407 |
ttccattttaagattagtttttataaaaatatctattgaaagatgtggacattttaaatggatagtgaatagtacttagta |
487 |
Q |
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| T |
29958848 |
ttccattttaagattagtttttatagaaatatctattgaaagatgtggacattttaaatggatagtgaatagtgcttagta |
29958768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 3553697 - 3553744
Alignment:
| Q |
57 |
acaaatttggatgagtcacacgtggtctctgtttcacacgataataat |
104 |
Q |
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| T |
3553697 |
acaaatttggatgagtcacacgtggtctctgttccacacgataataat |
3553744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 3553757 - 3553799
Alignment:
| Q |
383 |
tttttgtatttaagtttttactggttccattttaagattagtt |
425 |
Q |
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| T |
3553757 |
tttttgtattcaagtttttattggttccattttaagattagtt |
3553799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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