View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-3 (Length: 290)
Name: NF4712-Insertion-3
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-3 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 3374870 - 3374705
Alignment:
| Q |
123 |
ttaccgtctagatcccctaaagaaacattcatgtcacctgaccttccgcgactttccattggcatgaaccagccagataaagattgaatgtcatatctac |
222 |
Q |
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| T |
3374870 |
ttaccgtctagatccgctaaagaaacattcatgtcacctgaccttccgcgactttccattggcatgaaccagccagataaagattgaatgtcatatctac |
3374771 |
T |
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| Q |
223 |
cctgaaattcattttgcattattgaaagaaacacatagaaactgcatatgaataacaaacttcacctg |
290 |
Q |
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| T |
3374770 |
cctgaaattcaatttgcattattgaaagaaacac--agaaactgcatatgaataacaaacttcacctg |
3374705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 281
Target Start/End: Complemental strand, 3403057 - 3402827
Alignment:
| Q |
60 |
caggtacttacagttacaagacttgcagccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattcatgtcac |
159 |
Q |
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| T |
3403057 |
caggtacttacatttacaggacttgcagccaccaatggaccagctacgcgaccgccaacaacatgtccatgtagatccaccaaagaaacactcatgccac |
3402958 |
T |
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| Q |
160 |
ctga---------ccttccgcgactttccattggcatgaaccagccagataaagattgaatgtcatatctaccctgaaattcattttgcattattgaaag |
250 |
Q |
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| T |
3402957 |
cagatatacttcgccttccgcacttttcctttggcatgaatgagccagataaagttcgaatttcatatctaccgtgaacttcaatttgcattattgaaag |
3402858 |
T |
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| Q |
251 |
aaacacatagaaactgcatatgaataacaaa |
281 |
Q |
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| T |
3402857 |
aatcacacagaaacaacatatgattaacaaa |
3402827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 3369105 - 3368959
Alignment:
| Q |
9 |
tattagcctttaaatattccatttgattttatagacatatagtttccttcacaggtacttacagttacaagacttgcagccaccattggaccagctacgt |
108 |
Q |
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| T |
3369105 |
tattagcctctaaatattttatttgattttataaacctattattcctttcccaggtacttacagctgcaggacttgcaaccaccaatggaccagctacgc |
3369006 |
T |
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| Q |
109 |
gaccggcaacaacattaccgtctagatcccctaaagaaacattcatg |
155 |
Q |
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| T |
3369005 |
gaccaccaacaacatttccatctagatccacaaaagaaacattcatg |
3368959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 258
Target Start/End: Complemental strand, 3372867 - 3372669
Alignment:
| Q |
54 |
ccttcacaggtacttacagttacaagacttgcagccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattca |
153 |
Q |
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| T |
3372867 |
ccttcccaggtacttacttttactggactttcagccatcaatggaccagctacgcaaccttcaacaacatgtccatctagacccattaaagaaatactca |
3372768 |
T |
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| Q |
154 |
tgtcacctgaccttccgcgactttccattggcatgaaccagccagataaagattgaatgtcatatctaccctgaaattcattttgcattattgaaagaaa |
253 |
Q |
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| T |
3372767 |
tgccacca------ccgcgactttcgtttggcatgaatgggccagataaagatacaatacaatatttaccctgaaattcaatttacattatttaaagaaa |
3372674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 3377593 - 3377522
Alignment:
| Q |
193 |
agccagataaagattgaatgtcatatctaccctgaaattcattttgcattattgaaagaaacacatagaaac |
264 |
Q |
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| T |
3377593 |
agccagataaagatatattttcatatttaccctgaaattcaatttacattatttaaagaaacacataaaaac |
3377522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 3368945 - 3368876
Alignment:
| Q |
184 |
gcatgaaccagccagataaagattgaatgtcatatctaccctgaaattcattttgcattattgaaagaaa |
253 |
Q |
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| T |
3368945 |
gcatgaacgagccagataaagattgaatttgataaatgccgtgaaattcaatttgcattgttgaaagaaa |
3368876 |
T |
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