View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-4 (Length: 488)
Name: NF4712-Insertion-4
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 4 - 472
Target Start/End: Complemental strand, 36877767 - 36877299
Alignment:
| Q |
4 |
aacattattttgcagaatatatatgtttaattagagtgcaagaaaataagagtaagttattttttattctacataacaacataataaaagaaattagtac |
103 |
Q |
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| T |
36877767 |
aacattattttgcagaatatatatgtttaattagagtgcaagaaaataagagtaagttattttttattctacataacaacataatgaaagaaattagtac |
36877668 |
T |
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| Q |
104 |
attaataaacaatatttcnnnnnnnnaaaggaatgatatacaatatttctaaacacaagttatattatagcataatttaccgaaatattctcctcggata |
203 |
Q |
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| T |
36877667 |
attaatatacaatatttcttttttttgaaggaatgatatacaatatttctaaacacaggttatattatagcataatttaccgaaatattctcctcggata |
36877568 |
T |
|
| Q |
204 |
gcagtgtgaagaatactatcaccatcatttcgtacaagatcttgcaaatcgaccatgtcttcagaaatatgagcaagataagcaaaagcttgttttctcc |
303 |
Q |
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| T |
36877567 |
gcagtgtgaagaatactatcaccatcatttcgtacaagttcttgcaaattgaccatccctttggaaatatgagcaagataagcaaaagcttgttttctcc |
36877468 |
T |
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| Q |
304 |
aattaacagcagcttgnnnnnnnggtgtctcaccatttttatttttacaactcaacaaatatatcctctcattctcactaccaattatacacttgcatat |
403 |
Q |
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| T |
36877467 |
aattaacagcagcttgaaaaaaaggtgtctcaccatttttatttttacaactcaacaaatatatcctctcattctcactaccaattatacagttgcatat |
36877368 |
T |
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| Q |
404 |
tcttgcaaaaccccttgatgctgcaaaatgcaatggtgtgtctccacgttcattctccatttccaatgc |
472 |
Q |
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| T |
36877367 |
tcttgcaaaaccccttgatgctgcaaaatgcaatggtgtgtctccacgttcattcaccatttccaatgc |
36877299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 176 - 472
Target Start/End: Complemental strand, 36896565 - 36896266
Alignment:
| Q |
176 |
taatttaccgaaatattctcctcggatagcagtgtgaagaatactatcaccatcatttcgtacaaga---tcttgcaaatcgaccatgtcttcagaaata |
272 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||| ||| |||||| |
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| T |
36896565 |
taatttaccgaaatgttctccctggatagcagtgtgaagaacactatcaccatcatttcgcacaagaagttcttgcaaattgaccatccctttggaaata |
36896466 |
T |
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| Q |
273 |
tgagcaagataagcaaaagcttgttttctccaattaacagcagcttgnnnnnnnggtgtctcaccatttttatttttacaactcaacaaatatatcctct |
372 |
Q |
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| T |
36896465 |
tgagcaagataagcaaaagcttgttttctccaattaacagcagcttgaaaaaaaggtgtctcgccatttttatttttacaactcaacaaatatatcctct |
36896366 |
T |
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| Q |
373 |
cattctcactaccaattatacacttgcatattcttgcaaaaccccttgatgctgcaaaatgcaatggtgtgtctccacgttcattctccatttccaatgc |
472 |
Q |
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| T |
36896365 |
cattctcactaccaattatacacttacatattcttgcaaaaccccttgatgctgcaaaatgcaatggtgtgtctccatgttcattcccaatttccaatgc |
36896266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 175 - 488
Target Start/End: Complemental strand, 36889752 - 36889439
Alignment:
| Q |
175 |
ataatttaccgaaatattctcctcggatagcagtgtgaagaatactatcaccatcatttcgtacaagatcttgcaaatcgaccatgtcttcagaaatatg |
274 |
Q |
| |
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|||||||||| |||||||||||||| || || || ||||||||||| |||||||| | || |||||||||||||||| ||| || |||| |||||||| |
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| T |
36889752 |
ataatttaccaaaatattctcctcgaatcgcggtatgaagaatactgtcaccatcttctcttacaagatcttgcaaagtgactatctctttggaaatatg |
36889653 |
T |
|
| Q |
275 |
agcaagataagcaaaagcttgttttctccaattaacagcagcttgnnnnnnnggtgtctcaccatttttatttttacaactcaacaaatatatcctctca |
374 |
Q |
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| T |
36889652 |
agcaagataagcaaatgtttgttttctccaattaatagcagcttgaaaaagaggtgtctcaccatgcttatttttacgactcaacaaatatatcctctca |
36889553 |
T |
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| Q |
375 |
ttctcactaccaattatacacttgcatattcttgcaaaaccccttgatgctgcaaaatgcaatggtgtgtctccacgttcattctccatttccaatgctt |
474 |
Q |
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|| | | | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36889552 |
ttgttaatcccaataatacacttacatattcttgcaaaacctcttgatgctgcaaaatgcaatggtgtgtctccacgttcattctccatttccaatgctt |
36889453 |
T |
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| Q |
475 |
taactctttgatca |
488 |
Q |
| |
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|||||||| |||| |
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| T |
36889452 |
caactctttcatca |
36889439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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