View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-5 (Length: 484)
Name: NF4712-Insertion-5
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 24167871 - 24168346
Alignment:
| Q |
8 |
gctctgagtaggacatgaactcaagtcagcatacaggtaagatttacataaaacacaaggtaattaaaactaagtcatacaagattacctagcctaatca |
107 |
Q |
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| T |
24167871 |
gctctgagtaggacatgaactcaagtcagcatacaggtaagatttacataatacacaaggtaattaaaactaagtcatacaagattacctagcctaatca |
24167970 |
T |
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| Q |
108 |
attcttgttcccactctgagtgaatttgtttgacttccagttttgtatcttcaaaatagtatttcaccgtctgtagaaagaaaatcaaacttagaagtgt |
207 |
Q |
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| T |
24167971 |
attcttgttcccactctgagtgaatttgtttgacttccagttttgtatcttcaaaatagtatttcaccgtctgtagaaagaaaatcaaacttaca-gtgt |
24168069 |
T |
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| Q |
208 |
gtggtgctaaactgttaatctaaactcgtacatttgagcaacaagggaagtcagtcatgttatccaaattatacctcaagttgtttctgttgagtattga |
307 |
Q |
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| T |
24168070 |
gtggtgctaaactgttaatctaaactcatacatttgagcaacaagggaagtcagtcatgttatccaaattatacctcaagttgtttctgttgagtattga |
24168169 |
T |
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| Q |
308 |
ttacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgcagaatttggagaaatcatttgatgccaaact |
407 |
Q |
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| T |
24168170 |
ttacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgcagaatttggagaaatcatttgatgccaaact |
24168269 |
T |
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| Q |
408 |
acttctttgattaagatatagtgagatagcttctacaaactccctccttgagagacagccaatatccccttttaata |
484 |
Q |
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| T |
24168270 |
acttctttgattaagatatagtgagatagcttctacaaactccctccttgagagacagccaatatccccttttaata |
24168346 |
T |
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Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 277 - 473
Target Start/End: Original strand, 42236193 - 42236389
Alignment:
| Q |
277 |
tatacctcaagttgtttctgttgagtattgattacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgc |
376 |
Q |
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|||||||||||||||||||| |||| || |||| |||||| | |||||| |||||||| ||||| || || ||| ||||||||||| |||||| ||| |
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| T |
42236193 |
tatacctcaagttgtttctgctgagcatcaattatttcagcctgtttggctgaataattaacattatgctgagtactctcacgttttcccccacaagtgc |
42236292 |
T |
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| Q |
377 |
agaatttggagaaatcatttgatgccaaactacttctttgattaagatatagtgagatagcttctacaaactccctccttgagagacagccaatatc |
473 |
Q |
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| T |
42236293 |
agaatttagataaatcatttgacgtcaaactacttctttgattaagatataatgtgatagcttccataaattctctcttagagaggcagccactatc |
42236389 |
T |
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