View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712-Insertion-6 (Length: 377)
Name: NF4712-Insertion-6
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 27097935 - 27098070
Alignment:
| Q |
8 |
gaaattgcttctccagagagtatcaacttctttggtcgaagggaaatgtttccttcaaatgaattgatgctcgctttttcagtgtaaacgaactgttttt |
107 |
Q |
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| T |
27097935 |
gaaattgcttctagagagagtatcaacttctttggtcgaagggaaatgtttccttcaaatgaattgatgcccgctttttcagtgtaaacgaactgttttc |
27098034 |
T |
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| Q |
108 |
tatttaatatagtgaagatgagaaaaacacgagaaa |
143 |
Q |
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| T |
27098035 |
tatttaatatagtgaagatgagaaaaacacaagaaa |
27098070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 27180368 - 27180233
Alignment:
| Q |
8 |
gaaattgcttctccagagagtatcaacttctttggtcgaagggaaatgtttccttcaaatgaattgatgctcgctttttcagtgtaaacgaactgttttt |
107 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27180368 |
gaaattgcttctagagagagtatcaacttctttggtcgaagggaaatgtttccttcaaatgaattgatgcccgctttttcagtgtaaacgaactgttttc |
27180269 |
T |
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| Q |
108 |
tatttaatatagtgaagatgagaaaaacacgagaaa |
143 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
27180268 |
tatttaatatagtgaagatgagaaaaacacaagaaa |
27180233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 27098209 - 27098263
Alignment:
| Q |
323 |
acgtctagtactttcacacttaaagattttccactataatatgaactgattacag |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098209 |
acgtctagtactttcacacttaaagattttccactataatatgaactgattacag |
27098263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 27180094 - 27180040
Alignment:
| Q |
323 |
acgtctagtactttcacacttaaagattttccactataatatgaactgattacag |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27180094 |
acgtctagtactttcacacttaaagattttccactataatatgaactgattacag |
27180040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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