View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4712-Insertion-8 (Length: 228)

Name: NF4712-Insertion-8
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4712-Insertion-8
NF4712-Insertion-8
[»] chr7 (8 HSPs)
chr7 (7-228)||(39621786-39622006)
chr7 (7-182)||(39588919-39589097)
chr7 (7-78)||(39339044-39339115)
chr7 (7-78)||(39537741-39537812)
chr7 (7-78)||(39547206-39547277)
chr7 (7-107)||(39366438-39366538)
chr7 (7-107)||(39563837-39563937)
chr7 (7-78)||(39353887-39353958)
[»] chr2 (1 HSPs)
chr2 (7-107)||(44210681-44210781)
[»] chr8 (1 HSPs)
chr8 (7-74)||(4501668-4501735)
[»] chr1 (2 HSPs)
chr1 (137-175)||(2148656-2148694)
chr1 (137-175)||(2160484-2160522)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 39621786 - 39622006
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621786 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 39621885  T
Q  107 acaacaattgtatccctcagcggggtcagttctacaagctccataacttcctcgatgaacatctgcatccattagttagctccaattttgttaacgtgtg 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621886 acaacaattgtatccctcagtggggtcagttctacaagctccataacttcctcgatgaacatctgcatccattagttagctccaattttgttaacgtgtg 39621985  T
Q  207 ataataaataggggtgtaagct 228  Q
    |||||||||| |||||||||||    
T  39621986 ataataaata-gggtgtaagct 39622006  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 39588919 - 39589097
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 106  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| || ||||  ||||||||||| || ||    || || |||||| || | || |||    
T  39588919 agttggctcatccatgaatattatagaaggattagccactaactcaactgcaactgtcaaccttttgcgttgctccgtcgatagaccactaacccctggc 39589018  T
Q  107 a---caacaattgtatccctcagcggggtcagttctacaagctccataacttcctcgatgaacatctgcatccattagt 182  Q
    |   | ||||||| |||||| |||||| | || || ||||||||||| |||||||| ||||||||||||| ||||||||    
T  39589019 aatccgacaattgcatccctaagcgggtttagctccacaagctccatgacttcctcaatgaacatctgcaaccattagt 39589097  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 39339115 - 39339044
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctg 78  Q
    |||||||||||||||||| |||||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  39339115 agttggctcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgcgctg 39339044  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 39537741 - 39537812
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctg 78  Q
    |||||||||||||||||| ||||| |||||||| || || ||||| || |||||||||| |||||| |||||    
T  39537741 agttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgctg 39537812  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 39547206 - 39547277
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctg 78  Q
    |||||||||||||||||| ||||| |||||||| || || ||||| || |||||||||| |||||| |||||    
T  39547206 agttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgctg 39547277  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 39366538 - 39366438
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 106  Q
    |||||||||||||||||| |||||||||||||| || || || || || |||| ||| | |||||| |||||   ||| ||||||||| || ||||||||    
T  39366538 agttggctcatccatgaatattattgaaggattagctaccaattcaactgcaacagttagccttttgcgctgctctgtcgagagaccactaacaccaggc 39366439  T
Q  107 a 107  Q
    |    
T  39366438 a 39366438  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 39563837 - 39563937
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 106  Q
    |||||| ||||||||||| |||||||||||||| || || ||||| || ||||| ||||||| ||| |||||    || ||||||||| || ||||||||    
T  39563837 agttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaaccgtttgcgctgctccgtcgagagaccattaacaccaggc 39563936  T
Q  107 a 107  Q
    |    
T  39563937 a 39563937  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 39353958 - 39353887
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctg 78  Q
    |||||| ||||||||||| |||||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  39353958 agttggttcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgcgctg 39353887  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 44210681 - 44210781
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagtgtagagagaccagtagcaccaggc 106  Q
    |||||| ||||||||||| ||||| || ||||| |||||||  || || ||||||||||||||||| || |||   || ||||||||| || ||||||||    
T  44210681 agttggttcatccatgaaaattatggacggattagccactagttcaactgcaatagtcaaccttttacgttgttccgttgagagaccactaacaccaggc 44210780  T
Q  107 a 107  Q
    |    
T  44210781 a 44210781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 4501735 - 4501668
Alignment:
Q  7 agttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttc 74  Q
    |||||||||||||||||| || ||||||||||| || || | |||||||||||| |||| ||| ||||    
T  4501735 agttggctcatccatgaatatgattgaaggattagcaacaagctcgaccgcaattgtcagcctctttc 4501668  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 2148656 - 2148694
Alignment:
Q  137 tctacaagctccataacttcctcgatgaacatctgcatc 175  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  2148656 tctacaagctccataacttcctcaataaacatctgcatc 2148694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 2160484 - 2160522
Alignment:
Q  137 tctacaagctccataacttcctcgatgaacatctgcatc 175  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  2160484 tctacaagctccataacttcctcaataaacatctgcatc 2160522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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