View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712_high_2 (Length: 343)
Name: NF4712_high_2
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 8445926 - 8445607
Alignment:
| Q |
19 |
aaaagtttgcttcaataaaataggtaaaaacatgttgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgca |
118 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
8445926 |
aaaagtttacttcaacaaaataggtaaaaacatgttgtacttgcaattgcttttt-ggcttcttttgcttcacgagtaacagctaacacatagacatgca |
8445828 |
T |
|
| Q |
119 |
aatcaaaagaccaatgtttttgtcaataaataggtttcttctccctcaaacctctcatctcacgattaccctctattatctcttccttt--cctccannn |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
8445827 |
aatcaaaagaccaatgttattgtcaataaataggtttcttctccctcaa-cctctcatctcaaagttaccctctattatctcttcctttttcctccattt |
8445729 |
T |
|
| Q |
217 |
nnnnna-atttgttttagttgttttactccaaacacccccctgtttcagttgttttgcttcatgagtagttgaaattaaagagaagaatcagaaaccaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8445728 |
tttttttatttgttttagttgttttactccaaacacccccatgtttcagttgttttgcttcatgagtagttgaaattaaagagaagaatcagaaaccata |
8445629 |
T |
|
| Q |
316 |
cacgtccaattctttcttctca |
337 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
8445628 |
cacgtccacttctttcttctca |
8445607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 8454730 - 8454411
Alignment:
| Q |
19 |
aaaagtttgcttcaataaaataggtaaaaacatgttgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgca |
118 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
8454730 |
aaaagtttacttcaacaaaataggtaaaaacatgttgtacttgcaattgcttttt-ggcttcttttgcttcacgagtaacagctaacacatagacatgca |
8454632 |
T |
|
| Q |
119 |
aatcaaaagaccaatgtttttgtcaataaataggtttcttctccctcaaacctctcatctcacgattaccctctattatctcttccttt--cctccannn |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
8454631 |
aatcaaaagaccaatgttattgtcaataaataggtttcttctccctcaa-cctctcatctcaaagttaccctctattatctcttcctttttcctccattt |
8454533 |
T |
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| Q |
217 |
nnnnna-atttgttttagttgttttactccaaacacccccctgtttcagttgttttgcttcatgagtagttgaaattaaagagaagaatcagaaaccaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8454532 |
tttttttatttgttttagttgttttactccaaacacccccatgtttcagttgttttgcttcatgagtagttgaaattaaagagaagaatcagaaaccata |
8454433 |
T |
|
| Q |
316 |
cacgtccaattctttcttctca |
337 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
8454432 |
cacgtccacttctttcttctca |
8454411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 290
Target Start/End: Complemental strand, 8441407 - 8441146
Alignment:
| Q |
22 |
agtttgcttcaataaaataggtaaaaacatgttgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaat |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
8441407 |
agtttgcttcaacaaaataggtaaaaacatgttgtacttgcaattgtttttt-ggcttcttttgcttcacgagtaacagctagcacatagacatgcaaat |
8441309 |
T |
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| Q |
122 |
caaaagaccaatgtttttgtcaataaataggtttcttctccctcaaacctctcatctcacgattaccctctattatctcttcctttcctccannnnnnnn |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
8441308 |
caaaagaccaatgttattgtcaataaataggtttcttctccctc-aacctctcatctcaaagttaccctctattatctctacctttcctccaatcttttt |
8441210 |
T |
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| Q |
222 |
aatttgttttagttgttttactccaaacacccccctgtttcagttgttttgcttcatgagtagttgaaa |
290 |
Q |
| |
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||||||||| |||||||||||| ||| |||| ||||||| |||||||| ||||||||||||||||| |
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| T |
8441209 |
-atttgtttt-gttgttttactctaaa---ccccatgtttcacttgttttggttcatgagtagttgaaa |
8441146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 8450211 - 8450034
Alignment:
| Q |
22 |
agtttgcttcaataaaataggtaaaaacatgttgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaat |
121 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
8450211 |
agtttgcttcaacaaaataggtaaaaacatgttgtacttgcaattgtttttt-ggcttcttttgcttcacgagtaacagctagcacatagacatgcaaat |
8450113 |
T |
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| Q |
122 |
caaaagaccaatgtttttgtcaataaataggtttcttctccctcaaacctctcatctcacgattaccctctattatctct |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
8450112 |
caaaagaccaatgttattgtcaataaataggtttcttctccctc-aacctctcatctcaaagttaccctctattatctct |
8450034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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